Query= MSMg01no159_h01.b1 MSMg01no159_h01.b1 CHROMAT_FILE:
MSMg01no159_h01.b1 PHD_FILE: MSMg01no159_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:10 2005
(312 letters)
>mm_chr11_69615160_69615866
Length = 707
Score = 543 bits (281), Expect = e-159
Identities = 297/305 (97%), Gaps = 5/305 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtcccctaatgaaagctttccccttccctcctctctggcctctgtaccagata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcccctaatgaaagctttccccttccctcctctctggcctctgtaccagata 264
Query: 65 gaagatttctcctctatcccacagtcaagaccctcctatatttctaagatgtgttctcaa 124
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagatacctcctctatcccacagtcaagaccctcctatatttctaagatgtgttctcaa 324
Query: 125 taccccgaggcttctttctaccctattttggggccgctcctgcccagcctactcttacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccccgaggcttctttctaccctattttggggccgctcctgcccagcctactcttacac 384
Query: 185 agggtgtgggtcctaagctttgtggacattagctcaccctaggctgctgtcaatgtcaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggtgtgggtcctaagctttgtggacattagctcaccctaggctgctgtcaatgtcaag 444
Query: 245 aggagcccagctctgttttttttttttttttccttttctatactctaaatggagtgggtc 304
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 445 aggagcccagctctgttttctttttt-----ccttttctatactctaaatggagtgggtc 499
Query: 305 tccca 309
|||||
Sbjct: 500 tccca 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 707
Length adjustment: 9
Effective length of query: 303
Effective length of database: 698
Effective search space: 211494
Effective search space used: 211494
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_h01.g1 MSMg01no159_h01.g1 CHROMAT_FILE:
MSMg01no159_h01.g1 PHD_FILE: MSMg01no159_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:10 2005
(285 letters)
>mm_chr11_69736575_69737259
Length = 685
Score = 460 bits (238), Expect = e-134
Identities = 265/284 (93%), Gaps = 17/284 (5%)
Strand = Plus / Minus
Query: 1 ctgtgagtttgaagccagcctggtctatatgagttccaggacagccagggctttatagtg 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 641 ctgtgagtttgaagccagcctggtctatatgagttccaggacagccagagctctatagtg 582
Query: 61 agctcatgtcttatccctccgacctca-gggttctttcttttcattaccaaatctatttt 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 581 agctcatgtcttatccctccgacctcaggggttctttcttttcattaccaaatctatttt 522
Query: 120 cattatgctaaacaaacaaacaaacaaacaaacaaacaaacagacagacagacaggtaag 179
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 521 cattatgctaaacaaacaaacaaacaaacaaacaa----------------acaggtaag 478
Query: 180 ggacgtaggcacagcttgatccttgctgaacactcactggccctagattcaactgcctgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggacgtaggcacagcttgatccttgctgaacactcactggccctagattcaactgcctgg 418
Query: 240 taccatcaaataaacgagcaagtacaggccaaagctgtgcttta 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taccatcaaataaacgagcaagtacaggccaaagctgtgcttta 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
