BAC Information

Click to search

BAC

Clone NameMSMg01-159I08
Chromosome11 (Build37)
Map Location 14,780,039 - 14,780,318
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream geneLOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I08.T7 (MSMg01no159_i08.b1)MSMg01-159I08.TJ (MSMg01no159_i08.g1)
ACCAG359434AG359435
length730725
length of high quality
(start - end)
318 (47 - 364)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no159_i08.b1 PHD_FILE: MSMg01no159_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:16 2005CHROMAT_FILE: MSMg01no159_i08.g1 PHD_FILE: MSMg01no159_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCACTAAAATCTTCTGTTCCTGGACTTATTTTTGTTGAGAGAT
TTTAATGACTGTTGCTATTTCTTTAGGGGTAATGGAAATGTTTAGAGCAT
TTATCTGATCCTGATTTAACTTTGGTCCCTGGGCTGGCAGAGTGGGAGGA
CTGGTCCATGCTTTCCAAGCATCCCATGGTGGGTGTACGGCTGTGGGAAG
CTATGGACCCAGCCCACAGGTGTTGGTAAAGGGGCAGTCTGAGGGCTCTG
AGCCTCACAGAGGCCAGAGACAACAGGTTCTTAGTCTTGGGCATCCCAGA
TTCTGCTGGACATTTGTAAGTACTCCGAGCCAACCCCGATGCCCCAGGGG
TGGCTCTGTTATCCCCCGCCCCCTAGGAAAAAGAAAACAGGGAGAGAGGG
GGAACTCGGTGGTTTCCACACAGGTGAAAGTACTTGGTCCGGTCCATGGC
TGGAGTGCATGAAGGCCTTCTGTCAGGAGGTTAGATGCGGTTCTTTAGGG
TAAAGCCTATCCCATCATCCAAGTACAGTGGTTCTTGACGACCATAGCCT
GACTAAGGTTTCAGAGTTTTATTGTTCTAAGAGACATTAAGGCTTTCTCT
GATTGTTACTATTGTTGATCTTTCATTTGATTTGGGTTAGGTCTTTTGTG
TTTGCTTTTTTTGTGTGTCGGTTTTTATCG
ATCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCACTGTGAAAAGAAGTATA
AGGATCTTGAGGAGGAACCCAAGGAAGAATTTTTTTGGAATTCCAACACT
AAGGCAGATATCAATTTAAAAAAAAAAACCAATACTGGTTATCAATAGGC
ATTTGGGCAAATCTTGCTATATGTGATTTTCCCCCATATATAAGAATAAA
AATAAAATGATTGTTGTATTCTGCCATTTTATTTTTAAGTTTTCATGTTT
ATATTATTTTATGTCACTAAGTAATTTGTTAGATCACAATATAGTATGTT
TTGTCCTCTACGGGATATTACTTTTTCCCGGTCTGTCCCCGAGTTTCTGT
TTGGGGGCATGTGTGTATGCACCCCCGTGAAAAAAAAAAATTTACTTTGT
TGCATAGAGTTATTTTGTTATTTAAAAATGGTTGAATTATATATAACATT
CTCACTGCTACATTTGTATTTTGAAGAATTTTATGACTTTTTACTTTTGC
TACTTAACATTAAATGAAGTTAATAAAAAAATTACCAACACTTCGTGAAA
AAAAGACATTTGCTCCCAAGCTCAAAAGAACAAATGACTGACCAATTACC
ATTGAGATTTATTGTCCTTTGAAAATATCCCCAGCACCGCATAAGAAATA
CTGACTTGAAGTGGGATCTGAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i08.g1 MSMg01no159_i08.g1 CHROMAT_FILE:
MSMg01no159_i08.g1 PHD_FILE: MSMg01no159_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:16 2005
         (284 letters)



>mm_chr11_14779836_14780521
          Length = 686

 Score =  458 bits (237), Expect = e-133
 Identities = 270/281 (96%), Gaps = 4/281 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tcactgtgaaaagaagtataaggatcttgaggaggaacccaaggaagaa-tttttttgga 62
           ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 483 tcactgtgaaaagaagtataaggatcttgaggaggaatccaaggcagaattttttttgga 424

                                                                       
Query: 63  attccaacactaaggcagatatcaatttaaaaaaaaaaaccaatactggttatcaatagg 122
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 423 attccaacactaaggcagatatcaattaaaaaaaaaaaaacaatactggttatcagtagg 364

                                                                       
Query: 123 catttgggcaaatcttgctatatgtgattttccccca-tatataagaataaaaataaaat 181
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 363 catttgggcaaatcttgctatatgtgattttcccc-agtatataagaataaaaataaaat 305

                                                                       
Query: 182 gattg-ttgtattctgccattttatttttaagttttcatgtttatattattttatgtcac 240
           ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304 gattgcttgtattctgtcattttatttttaagttttcatgtttatatgattttatgtcac 245

                                                    
Query: 241 taagtaatttgttagatcacaatatagtatgttttgtcctc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taagtaatttgttagatcacaatatagtatgttttgtcctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 686
Length adjustment: 9
Effective length of query: 275
Effective length of database: 677
Effective search space:   186175
Effective search space used:   186175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)