BAC Information

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BAC

Clone NameMSMg01-159K02
Chromosome11 (Build37)
Map Location 6,486,593 - 6,486,884
singlet/doubletsinglet
Overlap geneCcm2
Upstream geneAnkrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, LOC665327
Downstream geneAB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K02.T7 (MSMg01no159_k02.b1)MSMg01-159K02.TJ (MSMg01no159_k02.g1)
ACCAG359516AG359517
length736732
length of high quality
(start - end)
325 (46 - 370)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no159_k02.b1 PHD_FILE: MSMg01no159_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:23 2005CHROMAT_FILE: MSMg01no159_k02.g1 PHD_FILE: MSMg01no159_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGGATCTACTTCTCAAGAACTAAGAGAGGATTTCATAATTAA
TAGAATGAGCATGGACTACCAACAAAGAGACAGAGAGTATACATAAGTCT
GAGAGAAAAACAAAATGGAACTCTAGAGTAACCAAAATGAAATCAGTGAG
TGACAGCTCAACAGTGTGAGCGACACCTCAACAGTGTGAATGACAGCTCA
ACAGTGTGAGTGACAGCTCAACAGTATGAATGACAGCTCAACAGTGTGAG
TGACAGCTCAACAGTATAAGTGACAGCTCAACAGTATGAATGACAGCTCA
ACAGTGTGAGTGACAGCTCATTATGTATCCCTCGCACACGCTCAACAGTG
TGAGTAACACCTCAACAGTGTGAACGACAGCTCAACAGTATAAATGACAG
CTCAACAGTGTGAATGACAGCTCAGCAGTGTGAGTGACAGCTCAACAGTG
TAAGTGACAGCTCAGCAGTGTTACAGCTCAGCAATGTGAGTGACAGCTCA
ACAGTGTGAATGACAGCTCAGCAGTGTGAGTGACAGCTCAACAGTATGAG
TGACAGCTCAACGGTGTGAATGACAGCTCAACAGTGTGAGGGACCGTTCA
ACAGTATGAATGACAGCTCAACAGTGTGAGTGACAGCTCATCAGTGTGAA
TGACAACTCAAGAGTGTGAGTGACTGTTCTTTGCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGAGGTCCAGGGTAGCCTTGA
ACTTACAACAGTTCTGCCTCAGCTTTCTGAGTAATGGAATTACACAAGTG
AGCTTTTTAAAAGTGGAAAAGGCTTGTTTGGCTCTTGGCTAATGAGGTTC
CAGACCAAGAGACCGTTGCTTCTAGGCTCGGTGCAGGTAGGAATTGTATG
GCAGAGCATAGCTGCTTGCTTCACAGCCAGAAAGCCCAAAAATAGGAACA
GGGTTGGGCCCCATGGTTTCTTTTGATAGCATGCCCCTGTGACCAAAGCA
CTTCCTAATTTTTTTCTTATTTTCCTGCCCCCCCCCACCTGGAGGCCAAG
TCTTTGTCACTTACTTAGCATCCAACCCAGAGTGATTAGTTTTTTTTCTC
AGGGTTGAGTGAGTCTGTCTTTTTGATGCTAGGCATTGAATTAGGTTAAG
CACTACGAAATTGTCACTATTTTAATCTGTAAAAATGTCAGTTTAACATG
ACTCAAACTAGCACAAAGTATCTGACATGAACTACCTCAGTTAGCAACTA
TAATACACCTAAGAGGCGTCCATGAGTCTCCGCTCACAAGTGGGTGAAGG
TAGGTGGCCTTGAACTGGTTCCTTCCTGCTTCAAAACCCTGACCAAGTTC
ACCAAGGTGAGCCTCTGGCTCTTGACTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k02.g1 MSMg01no159_k02.g1 CHROMAT_FILE:
MSMg01no159_k02.g1 PHD_FILE: MSMg01no159_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:23 2005
         (292 letters)



>mm_chr11_6486393_6487084
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgaggtccagggtagccttgaacttacaacagttctgcctcagctttctgagtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgaggtccagggtagccttgaacttacaacagttctgcctcagctttctgagtaat 260

                                                                       
Query: 61  ggaattacacaagtgagctttttaaaagtggaaaaggcttgtttggctcttggctaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattacacaagtgagctttttaaaagtggaaaaggcttgtttggctcttggctaatga 320

                                                                       
Query: 121 ggttccagaccaagagaccgttgcttctaggctcggtgcaggtaggaattgtatggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttccagaccaagagaccgttgcttctaggctcggtgcaggtaggaattgtatggcaga 380

                                                                       
Query: 181 gcatagctgcttgcttcacagccagaaagcccaaaaataggaacagggttgggccccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatagctgcttgcttcacagccagaaagcccaaaaataggaacagggttgggccccatg 440

                                                               
Query: 241 gtttcttttgatagcatgcccctgtgaccaaagcacttcctaatttttttct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcttttgatagcatgcccctgtgaccaaagcacttcctaatttttttct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)