BAC Information

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BAC

Clone NameMSMg01-160J08
Chromosome11 (Build37)
Map Location 93,635,360 - 93,635,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545, LOC100039286, Car10, LOC629636
Downstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J08.T7 (MSMg01no160_j08.b1)MSMg01-160J08.TJ (MSMg01no160_j08.g1)
ACCAG360216AG360217
length736722
length of high quality
(start - end)
635 (51 - 685)---
definitionCHROMAT_FILE: MSMg01no160_j08.b1 PHD_FILE: MSMg01no160_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:35 2005CHROMAT_FILE: MSMg01no160_j08.g1 PHD_FILE: MSMg01no160_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGCTCAAATCCTACCACGTTGTGACCTCCGGGATACCG
TTTAACTTCAATGTGCCTGTTTCCCCAGCCATAAATTTGTGGTGAAATGA
TATCCACCTTACAAGACTAAGCATGAAATAATGAATGGTGAGAGTTAACA
CATGAGCCAGGAACATAGTAAAAGTTAAGTAGGCGCAGGCTATTTCATCA
TCATCACTGTTGTTGTTGTCATTGCCGTCATCATCATCATCATCACTATT
CTCCCTTGTTTGTGCAGCTTCTCAAAGAGGAACCCGAGCCTTGATAAATT
CCAGCTCACCAGGGTCCATAACAACTCCATTATCATAGCCATAAAGCACT
GGGGGCACCTTGAACACTCCGCCTGATATAATGCTATACTCTGGGTGACA
GAGGCCAGCCCATAAATATATCAGACCAAGCCTCAAAGCCACAGCACTCA
GCCCCTTAAAAGTCAGCAGTCTGTTCTCCTCTCAGAATATATCCTCCTGG
CAGATGCAGAGTCCCATGGCCTAAATTTCCATACCCCACCAGTCCACACA
GATTTAATGCCAAGAGGAGCTGGGAGGGATGATGACAGAGATAAAGAGTA
CAAGAAGGAGTGAGGCCGTAGTGTTATTGTGGTACACGTGTCTGGGTTAA
ATGCATTGTACATACGATACCACTTATCACCATCCG
ATTCACCACTCAGGTGTAAATCCCAACAACAATCGCCTGTCGCCAAACCC
AATTCGGCTAAAATAACTTACTTTCGCCAACCTCTAATCCTTCCCCTTTT
TTTTTTCCCTCTTCACTATCAATATTTCTACCTTTTTTCCCTTATCATGC
CCCATTCTCACCCCATTCAATGCTCTCACCAACTATTAATCTTTTTACTG
TTATATGGCTCCCGGGATGTTTTTTTACCATTATAATTATTATTTATCTT
AATTTTAGATATTTTTTCTTTATTATCTCCTTTTTCGTACCCTGAATTTT
TTTTTATCCGTTCAACGACACTATAATTATTCTTATCCTTTTTATTTNTT
CCNNNNNNNNNCCCAGCTAAGTACTATGGGGTAAGGCCCTGGCCGGNCCG
CCCCTGGGCCGTTCGGAACATTTTTAGGGTGAAACACTAATAGAAAAGGA
ATCCCGCCGGGAAAATTTCAAATTGCCCTGGTTTTCTCCCCTGGAATCCT
TCCTGGTAAGGGGCACCCCAAAAACAATTGGCCATTAACCCACCCTCCAG
GGGGTTAAAAAAAAAACCATTTACCCTTTTAAAAAATGGGAAACCAAAGG
AAATCCTTAAATTTTTTAAAGGCCCAAAGGGCTGGGGGGGTTGGGGGCCA
ATAAAAAAACACTTTTTTTTAAAAAATTCCCCCCCGGGGGCCAAAAAAAA
GGTTTAAAGGGTCCACAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j08.b1 MSMg01no160_j08.b1 CHROMAT_FILE:
MSMg01no160_j08.b1 PHD_FILE: MSMg01no160_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:35 2005
         (635 letters)



>mm_chr11_93635162_93636197
          Length = 1036

 Score = 1102 bits (570), Expect = 0.0
 Identities = 619/638 (97%), Gaps = 7/638 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctcaaatcctaccacgttgtgacctccgggataccgtttaacttcaatgt 64
           ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 199 gaattctcagctcaaatcctaccacattatgacctccgggacaccgtttaacttcaatgt 258

                                                                       
Query: 65  gcctgtttccccagccataaatttgtggtgaaatgatatccaccttacaagactaagcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcctgtttccccagccataaatttgtggtgaaatgatatccaccttacaagactaagcat 318

                                                                       
Query: 125 gaaataatgaatggtgagagttaacacatgagccaggaacatagtaaaagttaagtaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaaataatgaatggtgagagttaacacatgagccaggaacatagtaaaagttaagtaggc 378

                                                                       
Query: 185 gcaggctatttcatcatcatcactgttgttgttgtcattg----c--cgtcatcatcatc 238
           ||||||||||||||||||||||||||||||||||||||||    |  | |||||||||||
Sbjct: 379 gcaggctatttcatcatcatcactgttgttgttgtcattgttgtcatcatcatcatcatc 438

                                                                       
Query: 239 atcatcactattctcccttgtttgtgcagcttctcaaagaggaacccgagccttgataaa 298
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcatcactattcccccttgtttgtgcagcttctcaaagaggaacccgagccttgataaa 498

                                                                       
Query: 299 ttccagctcaccagggtccataacaactccattatcatagccataaagcact-gggggca 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 ttccagctcaccagggtccataacaactccattatcatagccataaagcactggggggca 558

                                                                       
Query: 358 ccttgaacactccgcctgatataatgctatactctgggtgacagaggccagcccataaat 417
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccttgaacactctggctgatataatgctatactctgggtgacagaggccagcccataaat 618

                                                                       
Query: 418 atatcagaccaagcctcaaagccacagcactcagccccttaaaagtcagcagtctgttct 477
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 619 atatcagaccaagcctcaaagccacagcactcagcctcttaaaagtcagcagtctgttct 678

                                                                       
Query: 478 cctctcagaatatatcctcctggcagatgcagagtcccatggcctaaatttccatacccc 537
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 679 cctctcagaatatatcctcctcgcagacgcagagtcccatggcctaaatttccatacccc 738

                                                                       
Query: 538 accagtccacacagatttaatgccaagaggagctgggagggatgatgacagagataaaga 597
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 739 accagtccgcacagatttaatgccaagaggatctgggagggatgatgacagagataaaga 798

                                                 
Query: 598 gtacaagaaggagtgaggccgtagtgttattgtggtac 635
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtacaagaaggagtgaggccgtagtgttattgtggtac 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)