BAC Information

Click to search

BAC

Clone NameMSMg01-160K16
Chromosome11 (Build37)
Map Location 121,669,414 - 121,669,696
singlet/doubletsinglet
Overlap genenone
Upstream geneFasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K16.T7 (MSMg01no160_k16.b1)MSMg01-160K16.TJ (MSMg01no160_k16.g1)
ACCAG360275AG360276
length783740
length of high quality
(start - end)
96 (36 - 131)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no160_k16.b1 PHD_FILE: MSMg01no160_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:41 2005CHROMAT_FILE: MSMg01no160_k16.g1 PHD_FILE: MSMg01no160_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAT
TGAAAGCCAGGAAGGTGTCCTAAGGAAAACACACCCTCCTGCTAAGCCTT
CAATGAATGGAAAGGGGGGTGAGGTGGGGGGTNNNNNNNNCTCCTNNCTT
TTTTTTTTTTTTGTTTCACTCCCCCTTTTCCCTCTTCCTCTCTTCCCCTC
CCCCCCGCCAATCTCCCACTTCTCCCTCTTTCCCTTCAATATTATAAACA
AAAAAAATTATTATAAAAAAAAAAACAATATAAAAAAAAAAAAATAAACC
CACCCTTTTTTTTTTCACCAAAACACCAACACGAAAAAAAAAATTTAGAT
AAATTCAAAAACAGAGACCCTTAAAACATAATAAAAGAACTGTATATTAT
TTCCCCCCCAAAAATTATTAAAAAAAATTGGGGCGCTGGGTGCAACTTAT
AAATCTAAAAAAAAACACATTAACATATCCTCAATCTATTAATTTATCCT
TTTAAACAATACAAATACCCCCACCATTCCAATTATCCATTAACACCTTT
AATATATATATTCCATACCTCAAAATATTATCAATAACTCAATATTTATA
CTAATATCACCACACACCTCACTAAAAATTATAACTCTTCACCACACTTT
AACCCACACCTTACTCCACTATCTCACCACTATCTCTTTATCTCCTCACC
CCCTTCCTCACACCTTTTTTATATATATATAAAAATATCATAAACACACC
CTACAACCCTCTACTATTCCCATTATTATTCTA
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGCCGACTCCTACCCTCCAC
TTCTGCCTTTATGAAGCAGGTGCTAGTGGTTGACCAGGCTGCTTAGTGCC
TTTTCTACTTGAAGCACTGATTTTCATATGCATGAAGGAAGAGAAAACAT
ACCATTGAAGTAGTGATGGAGAATGACTGAAGTTCCAGCATCCTCTGACA
CTCTCCCATGGCCACAGCCTTTCTCTGACCCTGGCCCGAGTCCAAACTTT
GCAGCTATGAGGAAGATTAAAGGACAATCTTAGCAGCAGCCAGCTGTGCA
GGAAGAGAATTATTTATCCTCCCCCCCCCACCCTGAGCACTGTTTCTCAC
GCTTCTACAGTGCCACCCGCTGGATGAAGATGTTTATTGGTGCTTTTGCC
TGCGTACATGTCTGTCAGCCTGAGGGTGTCAGAACCCCTGATACTGGAGT
TTGTCCATCTGACATCTTCCCAGGCTCAGGCTTCACATCTTACTGAGACA
CATCTGCCTTCATTTCTGAAGAGCTCCTAAACTTGTTGTCACAAGTTTAC
TGCACTCAGTTCCCACCTGCTCTGTATCTGACAACCCCTGTTTTTGCCTC
CTCTCCTTCTCCTTCTCGTTTTTCTTACGGGTGCCACACCGTGATCCTAT
TGTTCCCCTATTCCTTCCTCCTCCATTCTTCTCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k16.g1 MSMg01no160_k16.g1 CHROMAT_FILE:
MSMg01no160_k16.g1 PHD_FILE: MSMg01no160_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:41 2005
         (284 letters)



>mm_chr11_121669214_121669897
          Length = 684

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggccgactcctaccctccacttctgcctttatgaagcaggtgctagtggttgacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 cctgggccgactcctaccctccacttctgcctttatgaagcaggtgctagcagttgacca 260

                                                                       
Query: 61  ggctgcttagtgccttttctacttgaagcactgattttcatatgcatgaaggaagagaaa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgtttagtgccttttctacttgaagcactgattttcatatgcatgaaggaagagaaa 320

                                                                       
Query: 121 acataccattgaagtagtgatggagaatgactgaagttccagcatcctctgacactctcc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 acataccattgaagtagtgatggaggatgactgaagttccagcatcctctgacactctcc 380

                                                                       
Query: 181 catggccacagcctttctctgaccctggcccgagtccaaactttgcagctatgaggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggccacagcctttctctgaccctggcccgagtccaaactttgcagctatgaggaaga 440

                                                      
Query: 241 ttaaaggacaatcttagcagcagccagctgtgcaggaagagaa 283
           |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttaaaggacaatcttagcagcatccagctgtgcaggaagagaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)