BAC Information

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BAC

Clone NameMSMg01-161N10
Chromosome11 (Build37)
Map Location 93,635,360 - 93,635,770
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545, LOC100039286, Car10, LOC629636
Downstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161N10.T7 (MSMg01no161_n10.b1)MSMg01-161N10.TJ (MSMg01no161_n10.g1)
ACCAG361140AG361141
length1,2531,252
length of high quality
(start - end)
412 (43 - 454)329 (70 - 398)
definitionCHROMAT_FILE: MSMg01no161_n10.b1 PHD_FILE: MSMg01no161_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:54 2005CHROMAT_FILE: MSMg01no161_n10.g1 PHD_FILE: MSMg01no161_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCCAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGCTCAAATCCTACCACGTTGTGACCTCCGGGATACCGTTTAACTT
CAATGTGCCTGTTTCCCCAGCCATAAATTTGCGGTGAAATGATATCCACC
TTACAAGACTAAGCATGAAATAATGAATGGTGAGAGTTAACACATGAGCC
AGGAACATAGTAAAAGTTAAGTAGGCGCAGGCTATTTCATCATCATCACT
GTTGTTGTTGTCATTGCCGTCATCATCATCATCATCACTATTCTCCCTTG
TTTGTGCAGCTTCTCAAAGAGGAACCCGAGCCTTGATAAATTCCAGCTCA
CCAGGGTCCATAACAACTCCATTATCATAGCCATAAAGCACTGGGGGCAC
CTTGAACACTCTGGCTGATATAATGCTATACTCTGGGTGACAGAGGCCAG
TTTTTTTTTCCCCCCCACCAAGCCTCAAAGCCTCACCACTAAAAAAAGGA
AAAGTCAGCAGTCTGTTCTCCTCTCAGAATATATCCTCCTGGCAGATGCA
GAGTCCCATGGCCTAAATTTCCATACCCCACCAGTCCACACAGATTTAAT
GCCAAGAGGAGCTGGGAGGGATGATGACAGAGATAAAGAGTACAAGAAGG
AGTGAGGCCGTAGTGTTATTGTGGTACACGTGTCTGGGGTAGATGGATTG
TACATAAGACAACCACTATCACAACCCTGAGAAAGTTTTAATCCCCTGTT
CTCCATCTTTGTAGTGATCGGAATGCACAGAAACAGACTAGAACACAGAC
TAAGGGATGCGAGTTAGATCTAAAGTAAAACAGGAGTGGGAGCAGGGCGG
AAATATAGAAACTCAGAGTGAATCGTGCAACCCTGTATCTCTTACTCCCA
TTCCTGCCCTGCTCAAAATCAATTCCCCGGGCCATTCCTAACTTTAACCC
CATAAAAAAATTTTTTTCTTCTCCCACCTTTATAAGTCCTATTTTGCCCC
CCTTCTGCTATTTTGTCCCCTTTTTTTTAACAACATTCCCCCTTTTCTTC
CCGTTCTCTCCACCTGTTCATAATCCACTCTTTTTTTTTTTTCCAACTTC
TATTTGCCTTCTTCTTCTTCATTCACTTCCTTCCATTTCTCTCTTCCTCT
CCGCCTCTCTATTTTCTCTCTCTCAACTCCTCACCTTATTTTCTATTTTC
CTCCTGCTTTCATCCATCTTGACATGTTCCCTCATTCTTCTCTTCCCTTT
CTT
NNCCAATATTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATGCTGTTTCCTGATCTCTGTAGGCACCAA
ACATGCATACACACAGGTAAAAACATACCCAAAATGAACAAGATCTAATT
TAGGCAGGTGTGGTGGCATATACTTTTAATTCCTGCAGAGGTAGGCAGAT
CCTTGAGTTCCTGGTCAGTGTTGCCTACAGAGTGAATTCCAAGACAACCA
TGATTACAAGACAGAAAAACCCTGTCTTGAAAAACCAAAAATTGCCTTAA
AAAAAAAAAAAAGAAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAA
AGGAAGGATGGGAGCTACAGCTCAGCTGGTAGAGTGCTTGTTTAGAAGAC
TGATTCCCTGGGTCTGACTGATCCTTGAAAAGCATAAACTGGTGTTGTGT
CATTTTTTTGCCCCCCCCCCATTTGGGAGGAACCCTCGGCAATAAAAAGT
TCATCATTATCCTTAAGGATGAATCAGACCCTGTCTCAACCACAACCAAC
TTTACTTCTGAGCTTTTTTAGAGAAACGAGACACACACACTTACTACTTC
AGGAAATCATGAATCCACACTTTTACTTCCAATCCTACTCTACTCCCAAA
GAGCCTTTTCTTTCTCACTTCAGTCTGTATTTTTCTTCCCAAGTTAAGAA
TGTTGTTCCTAGACAAAAACCAACTTACCTATTTAAAACTAATTTATATT
TGTTTTCTGATATGTGGTATACACATATGTTCATTTGTGTGTACACATGT
GAACATGCTTGTATCAGTGGTCAAATTCAGGTGCCTTCCTCAATCTCTTT
CTACTTTATCTGTTGAGATGTGATTCACTCAATCTGGAGTTCACTGGTCC
CGGGGCTATTCCGAAAGCTCCCGGAAACCTGCATGCCTTTGCCTCCCCCA
GGGCGGGGGTTAAAGGGTGTCCCCGCCCGGTTGGGCCTTTTTCCCACCAA
GGGGGGAACCCAACCCTTGGCCTCCTTTTGGTTTGCGAAAACCCTTTACC
ACAAGGGGATTCTTCCGGCCCCCCCTCCTATTTTAAAAAAAAGCTTTCTT
TTTGTTAATTACCTATCTAAACTCCCCTTTCCTCTTCAGCGCAGAATCCC
CCATTTCTCTTGCTAATATAAAAAAAGTAACGGGGCTATATTTCTATCAA
CCCCCTCTGTCATATCCTTCTCCCAAATATNTTTCACATTTTCTTTTTCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_n10.b1 MSMg01no161_n10.b1 CHROMAT_FILE:
MSMg01no161_n10.b1 PHD_FILE: MSMg01no161_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:54 2005
         (412 letters)



>mm_chr11_93635162_93635974
          Length = 813

 Score =  710 bits (367), Expect = 0.0
 Identities = 398/411 (96%), Gaps = 7/411 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctcaaatcctaccacgttgtgacctccgggataccgtttaacttcaatgt 64
           ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 199 gaattctcagctcaaatcctaccacattatgacctccgggacaccgtttaacttcaatgt 258

                                                                       
Query: 65  gcctgtttccccagccataaatttgcggtgaaatgatatccaccttacaagactaagcat 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 gcctgtttccccagccataaatttgtggtgaaatgatatccaccttacaagactaagcat 318

                                                                       
Query: 125 gaaataatgaatggtgagagttaacacatgagccaggaacatagtaaaagttaagtaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaaataatgaatggtgagagttaacacatgagccaggaacatagtaaaagttaagtaggc 378

                                                                       
Query: 185 gcaggctatttcatcatcatcactgttgttgttgtcattg----c--cgtcatcatcatc 238
           ||||||||||||||||||||||||||||||||||||||||    |  | |||||||||||
Sbjct: 379 gcaggctatttcatcatcatcactgttgttgttgtcattgttgtcatcatcatcatcatc 438

                                                                       
Query: 239 atcatcactattctcccttgtttgtgcagcttctcaaagaggaacccgagccttgataaa 298
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcatcactattcccccttgtttgtgcagcttctcaaagaggaacccgagccttgataaa 498

                                                                       
Query: 299 ttccagctcaccagggtccataacaactccattatcatagccataaagcactggggg-ca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 ttccagctcaccagggtccataacaactccattatcatagccataaagcactggggggca 558

                                                              
Query: 358 ccttgaacactctggctgatataatgctatactctgggtgacagaggccag 408
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccttgaacactctggctgatataatgctatactctgggtgacagaggccag 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)