BAC Information

Click to search

BAC

Clone NameMSMg01-162C07
Chromosome11 (Build37)
Map Location 92,421,111 - 92,421,398
singlet/doubletsinglet
Overlap genenone
Upstream geneKif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C07.T7 (MSMg01no162_c07.b1)MSMg01-162C07.TJ (MSMg01no162_c07.g1)
ACCAG361358AG361359
length703712
length of high quality
(start - end)
314 (44 - 357)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no162_c07.b1 PHD_FILE: MSMg01no162_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:27 2005CHROMAT_FILE: MSMg01no162_c07.g1 PHD_FILE: MSMg01no162_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTTTAAATATTTTTGAAATAAAATTCATATGTGCTAGTGCTTTAT
TCTCAAAGGATGTATTTCTCGAGCGCGCCCCCAACTCGCCAGCAAGAACG
ACGCCACAGCAGGATCCTTCTGCACACGTTTATTCAGTCCTATTTCTTCT
TTCTCTATATATCTCCCTTGTTTATATCTCCCCTGTTTGTATCTCTCCCT
CGTTTATATCTCCCAATAATAACAATCCTCTCTCGAATAATAATCCTCCC
TCTAACCCGGGCCTCTCACTCTTTTATACTCTCAGTTCCCATCCACGCAC
AGCATGTTTTGTTCACCTCACCACCCACGCAGCTTCAGCTAATCAGGGCA
GCAGGGGCATACCTCCATCAAATTGAATTCACCTGTATCCTGGTACACCT
GTGCAGCTCTCAAGATGTTTGTGGCTTATATGAGGAAGTCAGGTGCAAGT
CATACGACTTAGCTGCAGTCCCTGGCGCCTTTAGGACTGCCGCCACACCT
GCTCCTAACAATTCCCCCTTTTTTCTTTTTTGGCAGAGAGAATGTCTGTA
GATAGCCCCCCGCAGCCATGCCCCTTACCCGTCCTTGGGTGACAAACAGC
ATTGGTTTGATCCCTGTCTTATGTTGGTGACATGACCAGGGAGTCTTATC
ACN
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATAAAGGATGAATCCATATTTTGT
GATCAAGGAAGTCTATTTCTCTCTTCTTTTCCCCGGAGACATTTTTGAGC
ATATGTCCAAAGATATTTATTGCAGAGCTATTTAAATCCAAGATGTTGTT
GATGCTATAAGTCTTTCAGCAAGGGAATGGATAAGTACATTATGATTTAT
TTATAATAGAACATTTCAACAATTAAAGAGCTTTAGCGCTATGTAAAAAT
GAAAGAGATTTTTCAGCGATATATTCCAATGGGAAAAAACATGCAAAATG
ATAGAATAATATATCACTCACATAAACTTAACAATAAGAAGAGCTACACA
TCAATGTATGGAATAGAAACCCCAAGATATATGTGAGCAAATATACTAGC
ATAAATATGTAAGTTGTATCTGAGGGAGAAAGCCTGGAAAATAAATTGTA
GGTTTGAAGCATCAGCTGTATCTAATCACTGAACCTTTGAGTGAAAGAGA
AAATATGAATTTGCAGTACAAAGTGTTAGCTATTGCTAACAGTGGGTAAA
AATATGCTTTTAATATTATTCTGAGCCTGTCAAAGTATTGGATACTTGAT
AGGGAGTAGGGAGCCCAACTGGATGAACTAAGAACTCTAGTTATAATATA
ACATACGTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c07.g1 MSMg01no162_c07.g1 CHROMAT_FILE:
MSMg01no162_c07.g1 PHD_FILE: MSMg01no162_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:27 2005
         (290 letters)



>mm_chr11_92420911_92421598
          Length = 688

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%), Gaps = 4/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttataaaggatgaatccatattttgtgatcaaggaagtctatttctctcttcttttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 tttataaaggatgaatccatattttgtgatcaaggaagtctatttct-ttttcttttccc 259

                                                                       
Query: 61  cggagacatttttgagcatatgtccaaagatatttattgcagagctatttaaatccaaga 120
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 tggagacatttttgagcatatgtctaaagatatttattgcagagctatttaaatccaaga 319

                                                                       
Query: 121 tgttgttgatgctataagtctttcagcaagggaatggataagtacattatgatttattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttgttgatgctataagtctttcagcaagggaatggataagtacattatgatttattta 379

                                                                       
Query: 181 taatagaacatttcaacaattaaagagctttagcgctatgtaaaaatgaaagagattttt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 taatagaacatttcaacaattaaagagctttagctctatgtaaaaatgaaagagattttt 439

                                                              
Query: 241 cagcgatatattccaatgggaaaaaac-atgcaaaatgatagaataatata 290
           || ||||| |||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 440 caacgata-attccaatgg-aaaaaaccatgcaaaatgatagaataatata 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 688
Length adjustment: 9
Effective length of query: 281
Effective length of database: 679
Effective search space:   190799
Effective search space used:   190799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)