BAC Information

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BAC

Clone NameMSMg01-162I24
Chromosome11 (Build37)
Map Location 22,819,873 - 22,820,192
singlet/doubletsinglet
Overlap geneCommd1
Upstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
Downstream geneZrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162I24.T7 (MSMg01no162_i24.b1)MSMg01-162I24.TJ (MSMg01no162_i24.g1)
ACCAG361651AG361652
length701704
length of high quality
(start - end)
312 (46 - 357)320 (385 - 704)
definitionCHROMAT_FILE: MSMg01no162_i24.b1 PHD_FILE: MSMg01no162_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:57 2005CHROMAT_FILE: MSMg01no162_i24.g1 PHD_FILE: MSMg01no162_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGAGTGGAAGAAGTGAATCTCTGCATGTATACATGTATGGAA
TTATATGGTAAATCTATACATGTATGGAATTGAAAAGAGACCATCTCTCT
ACATAGCCCTGGCTGTCCTGGAACTCACTATATAACTGCCTGTCCCTGCT
TCCCAAGTGTTGCCTGGCTTAAAAGACATTGTAAAAGATTGTTCTACAGC
AAATAAAAACAAAACAAAACAAGACAAAGAAACCTAACCTTTTGACCTGC
CCTTTTACTCTTCCCTCTCTCTGTGCTCCATTTCCCTCGTGACTGGGTTC
CGATCTCTTATTTCTTCTCTNNTGCCCCACCTGGAGCCCATCAGAGCAGG
TAGCCATACCTAAACCACACAAGCAAACAGCTTTTTACCTCCTCTGGCAG
CTGGTCCAAAGCACGGCTCTTGCTTCAGTTATTTAAAACACCGTCTGCTC
CATACCCTGCACTCTTGCTTATTTATTTTCTTAATGGAATGAAATCATAC
TTCTAAAGTATAAGTCACAACATGTCGGCTCTCCTCAGCTTCTCATTCCC
TCAGAACGAAGGCAGACATGCTTAACTGTGGCCTGTAAACCTGTGTGGTT
GTCTCTTCCACCACCATCTCCACCATCTCTCATTTTACTGCCTGTTGCTC
G
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATCTTTGAGATCTACATAGTAGAAG
GAAGAAAAATTGACTCCTGCAAGTTGTCTTTTGATCTCTACATGTGCGAG
TGGCATTTACCTCACCCCCACAAAATAAATAAATAAGAAGAATACAAGAG
CAATGATGTTCTGATTATTACTACATACAAATAAATTTCAATTAGACTAC
AAATTCAGTGTTAATGCAGAGGAAACAATCCAAAGGGAGGGGGACTTAAA
AGAGTAAGTAGGATATTTTTAGAGGGGCTCTATCATACAAGACCAAGGAA
ACCTAAGATATTTGTTTAACACCACCCCCACCTTAAATACACAAAATTTA
AAATCCTGAAGAAAAATTGCATCATTAATAAAGTCTAAATGGTAATCCCT
AGGTTTAAATTTTCTCTAACAAAAAGCTGTAAATTGATGAAAACTTCTAA
ACAATTCAATAGAAGGTAACAGGCACAAGATGTCAGCATAGGTAACTGAG
AAGAGTCCATGTCAACAGATGCTGGACATATGACAACACTCCCACTAACA
GACAAAAGAATACAGAGCAAAATAATCCTAAGAATCTGTTTATGACTAGG
CTGAGAGAAATGGAAGTCTTCAGGGATGGCAAGGATGTAGGCAAAGGAAC
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_i24.g1 MSMg01no162_i24.g1 CHROMAT_FILE:
MSMg01no162_i24.g1 PHD_FILE: MSMg01no162_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:58 2005
         (320 letters)



>mm_chr11_22819673_22820392
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatacacaaaatttaaaatcctgaagaaaaattgcatcattaataaagtctaaatggta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatacacaaaattaaaaatcctgaagaaaaattgcatcattaataaagtctaaatggta 260

                                                                       
Query: 61  atccctaggtttaaattttctctaacaaaaagctgtaaattgatgaaaacttctaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccctaggtttaaattttctctaacaaaaagctgtaaattgatgaaaacttctaaacaa 320

                                                                       
Query: 121 ttcaatagaaggtaacaggcacaagatgtcagcataggtaactgagaagagtccatgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatagaaggtaacaggcacaagatgtcagcataggtaactgagaagagtccatgtca 380

                                                                       
Query: 181 acagatgctggacatatgacaacactcccactaacagacaaaagaatacagagcaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagatgctggacatatgacaacactcccactaacagacaaaagaatacagagcaaaata 440

                                                                       
Query: 241 atcctaagaatctgtttatgactaggctgagagaaatggaagtcttcagggatggcaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctaagaatctgtttatgactaggctgagagaaatggaagtcttcagggatggcaagg 500

                               
Query: 301 atgtaggcaaaggaacagaa 320
           ||||||||||||||||||||
Sbjct: 501 atgtaggcaaaggaacagaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)