BAC Information

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BAC

Clone NameMSMg01-162J21
Chromosome11 (Build37)
Map Location 3,275,283 - 3,275,568
singlet/doubletsinglet
Overlap geneLimk2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1
Downstream geneRnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162J21.T7 (MSMg01no162_j21.b1)MSMg01-162J21.TJ (MSMg01no162_j21.g1)
ACCAG361692AG361693
length715716
length of high quality
(start - end)
320 (43 - 362)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no162_j21.b1 PHD_FILE: MSMg01no162_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:02 2005CHROMAT_FILE: MSMg01no162_j21.g1 PHD_FILE: MSMg01no162_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTTTTAGCTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTGGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTGGACTTTTT
GTCTTATTGACGGTGTCCTTTGCCTTGCAGAAGCTTTGCAATTTTATGAG
GTCCCATTTATCGATTCTCGATCTTACAGCACAAGTCACTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTTTC
TCTACAAGTTTTTTTGTCTCTGCCCCCCCCCCGCCAGTTCCTTAATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCT
TCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTCCACTGGATGATTTTTGCTCGCTTGTCAATGATCAAGTGACCATAAG
TGTGTGGGTTCATTTCTGGGTTTTCAATTCTATTCCATTGTTCTACTTGT
CTGTCACTATACCAGTACCATGCAGTTTTTATCGCAATTGCTCTGTAATA
CAGCTTTGGGTCAGGCATGGTGATTCCACCAGAGGTTTTTTATCCCTGAG
CAGAGTTTTTGCTAT
GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTATAAACCAGGCTGGCCTTGAATTC
AGAGACTCTGCTGCCTGGGTACTGGGATTAAAGTCCTGTGCTAGCACACC
TGCTTATGGACGTGTCTTCGTAATTGAGGGACCCTGCTCTGATAATTTTA
GCTTGTGTTAAGTTGACATAAAACCATCACGGCACTCTCCAAGCGTTCTG
GGCACTTCCAAAGTCTAGAGTGAGCTGGGGAGGGGAGGGGCAGGGACCAG
AGAGGTAGCCTGTTGGAGGAATGGCCTTGCTAAGCAGCAAGGAGACGCAG
GTCTCCATATTTTTTTTACCCCACCCCCCCCGCCCTGTATCTCTTCAGGA
GGCTGAGGCAGGAGGATCACAAACAAGACCAGACTACATTGTGAGATCCT
GTTTCAAAATTTAAATTTTTCTTTAAAAAATAAAAAGAGAGCTCCAGATA
TACAAACCCGGAGTGTTTGCCCGGCATGCTCAAGTAATTCCCAACTCGGT
CTAAAGACAGCAGCAAGCCACAAGCAGCCTTTCCCTTGTGCAGCAAGCAC
AGGTTGCTGTGCGTCGGATCCGTTGTCCAGAGCTTTCGTACAGGCTGAGG
ATGGGGTGACTCATAAGTTTACCACATCTCTCAAGGGTGGTCACTTGGGG
CTGTCATCTTTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_j21.g1 MSMg01no162_j21.g1 CHROMAT_FILE:
MSMg01no162_j21.g1 PHD_FILE: MSMg01no162_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:02 2005
         (287 letters)



>mm_chr11_3274919_3275605
          Length = 687

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctataaaccaggctggccttgaattcagagactctgctgcctgggtactgggattaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 650 actctataaaccaggctggctttgaattcagagactctgctgcctgggtactgggattaa 591

                                                                       
Query: 61  agtcctgtgctagcacacctgcttatggacgtgtcttcgtaattgagggaccctgctctg 120
           ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||
Sbjct: 590 agtcctgtgctagcacacctgcttatggacacgtcttcgtaattgagggtccctgctctg 531

                                                                       
Query: 121 ataattttagcttgtgttaagttgacataaaaccatcacggcactctccaagcgttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 530 ataattttagcttgtgttaagttgacataaaaccatcacggcactctccaagtattctgg 471

                                                                       
Query: 181 gcacttccaaagtctagagtgagctggggaggggaggggcagggaccagagaggtagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gcacttccaaagtctagagtgagctggggaggggaggggcagggaccagagaggtagcct 411

                                                         
Query: 241 gttggaggaatggccttgctaagcagcaaggagacgcaggtctcca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gttggaggaatggccttgctaagcagcaaggagacgcaggtctcca 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)