BAC Information

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BAC

Clone NameMSMg01-163O16
Chromosome11 (Build37)
Map Location 86,084,148 - 86,112,592
singlet/doubletdoublet
Overlap geneThrap1
Upstream genePpm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163O16.T7 (MSMg01no163_o16.b1)MSMg01-163O16.TJ (MSMg01no163_o16.g1)
ACCAG362568AG362569
length723722
length of high quality
(start - end)		315 (47 - 361)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no163_o16.b1 PHD_FILE: MSMg01no163_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:37 2005CHROMAT_FILE: MSMg01no163_o16.g1 PHD_FILE: MSMg01no163_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,112,281 - 86,112,592)(86,084,148 - 86,084,433)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCCTTCCCCATCCACCCCTAGGTTTCCAACTCCAAGGACTCCA
AGGACTCCAAGGACCCCTCGTGGGGCTGGTGGGCCTGCTAGTGCTCAAGG
TTCAGTCAAGTATGAGAATTCAGACTTGTATTCACCAGCTTCCACCCCAT
CTACATGCCGACCCCTCAATTCTGTTGAACCTGCAACTGTTCCTTCCATC
CCTGAAGCGCACAGTCTTTATGTAAACCTCATCCTTTCAGAATCAGTAAT
GAATTTGTTTAAAGACTGTAATTTTGATAGTTGCTGTATTTGTGTCTGCA
ATATGAATATCTTGGGTGCCGACGCTGCAGTTTACATTCCAGACCCAACC
CAGGAAGCACAGTATCGGTGCACCTGTGGCTTCAGTGCTGTCATGAACCG
AAAATTTGGAAATAATTCAGGATTATTTCTTGAAGATGAACTTGACATCA
TAGGACGTAACACAGACTGTGGGAAAGAAGCAGAAAAACGTTTTGAAGCT
CTCAGGGCTTCCTCTGTGGAGAATGTTAATGGAGGCCTGAAGGAATCTGA
AAAGGTGCCTGATGAATTAATATTACTGCTACAAGATCAATGCACTAATT
TATTTTCACCCTTTGGAGCAGCAGACCAAGATCCTTTTCCCAAAGTGGGT
ATAAGTAGCAATTGGGTGCGTGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTCCTCATGTTCCTCTCCATG
CTTTAATATTCTTTAACATTAATGGGTACTATGGCTCATTACTTTTCACA
AATACTGTGACTGGAAAAAAAAGGTTAATTTTTGCTACGAAAGTGTTATA
ATACGTTTTGAATAATCAGTCATCATCCTAAAGAGCTCAGTAAAGTCAAT
GAAAAATAGGGTTATAGCCCCGCCCCCCAAGTCAAAACAATATTTGTTGA
AGTAATAAGAATTAGACCCCATCACAAATGACTTCCACTGAGAACTGTAA
CTTAATCTTGCTTCAAAATACCCTTCCTTCCCGTTCTTTCCTTGCGTAAT
TCCATCAAACGAGGATCACAGCATATTCATGATGAAGTTATATAACTGAT
TCAGCACCACAAAATGAACTGGGAGACATGAGCGTCTGTCCTGGACTGCA
GGGTCACAGGTTAGCCATGAGAGTGCATTGTACTGTTCCAAAACAAACCT
GAAAGCGAATAAACTGTGTCAATCCATCTCATTCAATATACACTTGGATA
GTACTTTCAAGACTCAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTNGTGT
GCGTGTNNNNNNTNNNNNNNNTNNNTTTTNTNTTTTTNTTTNTTTTTTTN
TNNNNTTTTTCTTTTTTTNTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_o16.b1 MSMg01no163_o16.b1 CHROMAT_FILE:
MSMg01no163_o16.b1 PHD_FILE: MSMg01no163_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
         (315 letters)



>mm_chr11_86112078_86112792
          Length = 715

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttccttccccatccacccctaggtttccaactccaaggactccaaggactcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcttccttccccatccacccctaggtttccaactccaaggactccaaggactcca 456

                                                                       
Query: 64  aggacccctcgtggggctggtgggcctgctagtgctcaaggttcagtcaagtatgagaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggacccctcgtggggctggtgggcctgctagtgctcaaggttcagtcaagtatgagaat 396

                                                                       
Query: 124 tcagacttgtattcaccagcttccaccccatctacatgccgacccctcaattctgttgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcagacttgtattcaccagcttccaccccatctacatgccgacccctcaattctgttgaa 336

                                                                       
Query: 184 cctgcaactgttccttccatccctgaagcgcacagtctttatgtaaacctcatcctttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctgcaactgttccttccatccctgaagcgcacagtctttatgtaaacctcatcctttca 276

                                                                       
Query: 244 gaatcagtaatgaatttgtttaaagactgtaattttgatagttgctgtatttgtgtctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaatcagtaatgaatttgtttaaagactgtaattttgatagttgctgtatttgtgtctgc 216

                       
Query: 304 aatatgaatatc 315
           ||||||||||||
Sbjct: 215 aatatgaatatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_o16.g1 MSMg01no163_o16.g1 CHROMAT_FILE:
MSMg01no163_o16.g1 PHD_FILE: MSMg01no163_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
         (287 letters)



>mm_chr11_86083948_86084634
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgttcctcatgttcctctccatgctttaatattctttaacattaatgggtactatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgttcctcatgttcctctccatgctttaatattctttaacattaatgggtactatggc 260

                                                                       
Query: 61  tcattacttttcacaaatactgtgactggaaaaaaaaggttaatttttgctacgaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattacttttcacaaatactgtgactggaaaaaaaaggttaatttttgctacgaaagtg 320

                                                                       
Query: 121 ttataatacgttttgaataatcagtcatcatcctaaagagctcagtaaagtcaatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttataatacgttttgaataatcagtcatcatcctaaagagctcagtaaagtcaatgaaaa 380

                                                                       
Query: 181 atagggttatagccccgccccccaagtcaaaacaatatttgttgaagtaataagaattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagggttatagccccgccccccaagtcaaaacaatatttgttgaagtaataagaattag 440

                                                         
Query: 241 accccatcacaaatgacttccactgagaactgtaacttaatcttgc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accccatcacaaatgacttccactgagaactgtaacttaatcttgc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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