BAC Information

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BAC

Clone NameMSMg01-163P22
Chromosome11 (Build37)
Map Location 24,890,022 - 24,890,297
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163P22.T7 (MSMg01no163_p22.b1)MSMg01-163P22.TJ (MSMg01no163_p22.g1)
ACCAG362621AG362622
length748755
length of high quality
(start - end)		315 (45 - 359)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no163_p22.b1 PHD_FILE: MSMg01no163_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:43 2005CHROMAT_FILE: MSMg01no163_p22.g1 PHD_FILE: MSMg01no163_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATAACCAATTTGGAGGCTCTTCCCCAGGGAAGACTGTTTCTCCCA
ATCTTCATCGGTCTCACTGTCATTAAAGAAAGACCTCCTAGCAGTATATG
GAAACCATTACAGAAAACCACAACTGATTCAAATGTTGAGAACAGGAGAC
CTTGTGCTATTCAGCTCCAACTGATATATCCACAGCAAAACTCCTGCATT
TAGGCTCAAGTCTCATAGCAGAAGAGGTGGGCAGTGACTTAAGAGAGAAG
AATAGGAATTTTGCTATGGGACTTTCATCTCCTAGGACTTTCCGAAGAGA
TACACTCATGATTTCTTGTCACCCCCCCCCCCATGGCCTGAAAACTGGTG
ACACCAACAGACACGCTAATGTAGAAAAGGAGATTGTATGGGGTCCCCAC
CTTAGACAAGAATTATGACAGTTAATGCATGTGGAGCATTTCCTGACTCT
GTGTTAAGCAGTAGTCCCTTTTTTGAAGGAACCACACTATCTGCTTTTTA
CAGATCTGAGAACTGAATAAGGATTCCTTCTGTGGGCCTGGACACCTTAT
CTGTGTACAGCAATATTTCCAGGCTACATTTGCAGGCCTTGTGCTCACAA
AGGGGTATTCCCCCCCCTCATTCTATAGGCCAATTCTTAAAACCAAGTGG
AATTTGCCATATTTCCATAAGAAGAGGCTGTGTTCTGCCACTGTACCT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGGAATTGGCTAGCAATGCTGATCT
GCTGCAATATGGTTAGAACAAATGTGTCTGTTAAAGGCACAGAAATTTGG
AAATATACACACCTTAGTCAAAACAAATGGGTCTCAGGTCCCTCATTAAC
AATACTCGAGACATATTGGGTCAATGTTCACCCTTTCAAGGGCCTAGAAA
ACACATACACACACACAAACACACACACGAAATGAAAGAAGGGAAGGAGG
GAAGGGGAGCAAAGGGCAGAAGGAAGTTAGGAAGAATGAAAGGGATGGAG
GAAGGAAGGAATGAAGGAACCCCCCCCCACGGAAGGATGTTTTTTTTTTT
TTTTTTTTTTTTCCCCCCTAATAAAAAAAAAAAATGGGGGGGGGGGGGGG
TCTTTTTATTCCTTTTGAACTCACACCCCTTCTTGTTCTACTTTTATTAT
TTCCCTATATTTTATATATCTTTACATCTTAAACCAATCTCTTGATAACT
TTCCCATATATTTTTTATTCTTATTTTCGATGCGGAGTTACTATTCTTTC
TACTAGTTAATTGCGTTATTGCATATATTATATCCCTCTACTTTCATATA
CAATCTATCTCTCTATTTAACTATTATTCTACGCTTTTTGCCGTGTCTTT
TTTTCCCACATTTATAATACGAATAAGTTTATTGCTTTGGGTTTTCACTC
ACTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_p22.g1 MSMg01no163_p22.g1 CHROMAT_FILE:
MSMg01no163_p22.g1 PHD_FILE: MSMg01no163_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:43 2005
         (284 letters)



>mm_chr11_24889924_24890607
          Length = 684

 Score =  514 bits (266), Expect = e-150
 Identities = 276/284 (97%), Gaps = 8/284 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaattggctagcaatgctgatctgctgcaatatggttagaacaaatgtgtctgttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggaattggctagcaatgctgatctgctgcaatatggttagaacaaatgtgtctgttaaag 315

                                                                       
Query: 61  gcacagaaatttggaaatatacacaccttagtcaaaacaaatgggtctcaggtccctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcacagaaatttggaaatatacacaccttagtcaaaacaaatgggtctcaggtccctcat 255

                                                                       
Query: 121 taacaatactcgagacatattgggtcaatgttcaccctttcaagggcctagaaaacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taacaatactcgagacatattgggtcaatgttcaccctttcaagggcctagaaaacacat 195

                                                                       
Query: 181 acacacacacaaacacacacacgaaatgaaagaagggaaggagggaaggggagcaaaggg 240
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 acac--------acacacacacgaaatgaaagaagggaaggagggaaggggagcaaaggg 143

                                                       
Query: 241 cagaaggaagttaggaagaatgaaagggatggaggaaggaagga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cagaaggaagttaggaagaatgaaagggatggaggaaggaagga 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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