BAC Information

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BAC

Clone NameMSMg01-165K23
Chromosome11 (Build37)
Map Location 61,588,326 - 61,742,129
singlet/doubletdoublet
Overlap geneUlk2, Akap10
Upstream geneTop3a, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165K23.T7 (MSMg01no165_k23.b1)MSMg01-165K23.TJ (MSMg01no165_k23.g1)
ACCAG363756AG363757
length735738
length of high quality
(start - end)		686 (42 - 727)669 (68 - 736)
definitionCHROMAT_FILE: MSMg01no165_k23.b1 PHD_FILE: MSMg01no165_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:57 2005CHROMAT_FILE: MSMg01no165_k23.g1 PHD_FILE: MSMg01no165_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,588,326 - 61,589,010)(61,741,504 - 61,742,129)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
GTGCTTCTCCCCCGGAGTTTTCAATATTTGAGTCCACAAGCTCATGCCTA
ATTTGCCCCAACTTAGGTTCCTCTTCCTTGTTCCTAAGAAACTGAGACAG
GCCATTTCTAATCAGAGCACTTCCTGGTTCTCATGCTGGACTACAGAACA
GCTCCTCTTGTGGGAACCAGTAAACACTGTGCTATGGAAAAGAAGTCATT
CACTCATTTATTGAGTGTTCTCAAACAGAATAAAGTTGTTTATCAGCAGT
TTTAAGCACAGCATTCCCAGGCAGGAGAAGTGCTACTTCACAGGGTCAGC
TGGATAGAGAGGGAGAGAAAGGGAGTGAGATGGAAAGAGGGGTGCCATCC
TCTCTGACCTGAAGCGCTGCAGGAACTGACACTGAACACCAGCTGCAGGC
ACAAGGGAGGCACAGGAACCCCGACACGACAGATGCATCAGGGACCTACT
CCATGTCCACATCTCTGCTGCATTCATCTCAACTTCCTTCTGCCCTTGTA
AACTACCTTGTGTTAACTACCGAGAGCTCCTACACAAGCTCCTACACCTG
GTCCTTGTGAGGCCCGCTCGTCTTTCTAGAAGAGAACAGGGCACATGAGG
GCTGTAGGAAGGAATTATGTCAAGAACAGAGCTTCAACAGGTGAGAGTTA
GAAAAAACCCACAGAGCAAGAAAACCAATTAGCAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTATGTAACCTTGAAACGTAAAACTAGAGGAT
CAGTAGTAGAATGTAACTTTAGAGAGGTCAGGAAAGACACTGGAGGTACC
AGGAATAAAGAGCTGGTGCCCTTTAGGAAAGGCAAGGTGGCCACTGTGGC
TGAGGCATAGAGAGGCAGATAGGCAGACACCACATTATCGAGAGTTTTAT
TCCAAATGCAGAGAGAATATATTGTAAAGCTTTTGAAGAGAGGTGACCTT
ACAATAAAGGGTGATCTGATTATTTGCTTAGAAAGTTTATTCTAGAGCCA
GATGCTCAGCAGATAAAGACCCTTGCTGTGCAGCCTAACCATCAGAGTTA
GAGCCCCAGGACCCACAACGGCGGAGGGAAAGAGTAACTCCCATTAAGTT
GTCCTCTGACCTCCACACATGTGCTGTGTGGTACATCCACTCCCACAAAA
TAAATAAATGTACTTAAGGAGTAAAAAGATTATTCCAGATGATTTCTGGA
GATTGAATGTGGCAAGAGAGCTAGAAACAACCTTTTTGAGGGGTTGGGAG
TCAAGACAGTCTGGCTTTGTAGTCCTGGCCTTAGCATTTCCTGTTGAGAT
GGGGACCTTGTGGACATCTTCTTCCTCTAATTTAGTATTTGGATTATAGG
CATGTATCACCACACCCAACCTCTGATAACAGCCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_k23.b1 MSMg01no165_k23.b1 CHROMAT_FILE:
MSMg01no165_k23.b1 PHD_FILE: MSMg01no165_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:57 2005
         (686 letters)



>mm_chr11_61588124_61589210
          Length = 1087

 Score = 1270 bits (657), Expect = 0.0
 Identities = 678/685 (98%), Gaps = 1/685 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctgtgcttctcccccggagttttc-aatatttgagtccacaagctcatgcctaat 61
           ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgtgcttctcctctggagttttcaaatatttgagtccacaagctcatgcctaat 262

                                                                       
Query: 62  ttgccccaacttaggttcctcttccttgttcctaagaaactgagacaggccatttctaat 121
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 ttgccccaacttaggttcctcttccttgttcctaagagactgagacaggccatttctaat 322

                                                                       
Query: 122 cagagcacttcctggttctcatgctggactacagaacagctcctcttgtgggaaccagta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagagcacttcctggttctcatgctggactacagaacagctcctcttgtgggaaccagta 382

                                                                       
Query: 182 aacactgtgctatggaaaagaagtcattcactcatttattgagtgttctcaaacagaata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aacactgtgctatggaaaagaagtcattcactcatttattgagtgttctcaaacagaata 442

                                                                       
Query: 242 aagttgtttatcagcagttttaagcacagcattcccaggcaggagaagtgctacttcaca 301
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 aagttgtttatcagcagttttaagcacagcattcccaggcaggagaaatgctacttcaca 502

                                                                       
Query: 302 gggtcagctggatagagagggagagaaagggagtgagatggaaagaggggtgccatcctc 361
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 gggtcagctggatagagagggagtgaaagggagtgagatggaaagaggggtgccatcctc 562

                                                                       
Query: 362 tctgacctgaagcgctgcaggaactgacactgaacaccagctgcaggcacaagggaggca 421
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgacctgaagtgctgcaggaactgacactgaacaccagctgcaggcacaagggaggca 622

                                                                       
Query: 422 caggaaccccgacacgacagatgcatcagggacctactccatgtccacatctctgctgca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caggaaccccgacacgacagatgcatcagggacctactccatgtccacatctctgctgca 682

                                                                       
Query: 482 ttcatctcaacttccttctgcccttgtaaactaccttgtgttaactaccgagagctccta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttcatctcaacttccttctgcccttgtaaactaccttgtgttaactaccgagagctccta 742

                                                                       
Query: 542 cacaagctcctacacctggtccttgtgaggcccgctcgtctttctagaagagaacagggc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cacaagctcctacacctggtccttgtgaggcccgctcgtctttctagaagagaacagggc 802

                                                                       
Query: 602 acatgagggctgtaggaaggaattatgtcaagaacagagcttcaacaggtgagagttaga 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 acatgagggctgtaggaaggaattatgtcaagaacagagcttcaacaggtgagagttaga 862

                                    
Query: 662 aaaaacccacagagcaagaaaacca 686
           |||||||||||||||||||||||||
Sbjct: 863 aaaaacccacagagcaagaaaacca 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space:   728052
Effective search space used:   728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_k23.g1 MSMg01no165_k23.g1 CHROMAT_FILE:
MSMg01no165_k23.g1 PHD_FILE: MSMg01no165_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:57 2005
         (669 letters)



>mm_chr11_61741504_61742572
          Length = 1069

 Score = 1180 bits (610), Expect = 0.0
 Identities = 622/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgtaaccttgaaacgtaaaactagaggatcagtagtagaatgtaactttagagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtatgtaaccttgaaacgtaaaactagaggatcagtagtagaatgtaactttagagagg 567

                                                                       
Query: 61  tcaggaaagacactggaggtaccaggaataaagagctggtgccctttaggaaaggcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaggaaagacactggaggtaccaggaataaagagctggtgccctttaggaaaggcaagg 507

                                                                       
Query: 121 tggccactgtggctgaggcatagagaggcagataggcagacaccacattatcgagagttt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 506 tggccactgtggctgaggcatagagaagcagataggcagacaccacattatcgagagttt 447

                                                                       
Query: 181 tattccaaatgcagagagaatatattgtaaagcttttgaagagaggtgaccttacaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tattccaaatgcagagagaatatattgtaaagcttttgaagagaggtgaccttacaataa 387

                                                                       
Query: 241 agggtgatctgattatttgcttagaaagtttattctagagccagatgctcagcagataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agggtgatctgattatttgcttagaaagtttattctagagccagatgctcagcagataaa 327

                                                                       
Query: 301 gacccttgctgtgcagcctaaccatcagagttagagccccaggacccacaacggcggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 326 gacccttgctgtgcagcctaaccatcagagttagagccccaggacccacaatggtggagg 267

                                                                       
Query: 361 gaaagagtaactcccattaagttgtcctctgacctccacacatgtgctgtgtggtacatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaagagtaactcccattaagttgtcctctgacctccacacatgtgctgtgtggtacatc 207

                                                                       
Query: 421 cactcccacaaaataaataaatgtacttaaggagtaaaaagattattccagatgatttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cactcccacaaaataaataaatgtacttaaggagtaaaaagattattccagatgatttct 147

                                                                       
Query: 481 ggagattgaatgtggcaagagagctagaaacaacctttttgaggggttgggagtcaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggagattgaatgtggcaagagagctagaaacaacctttttgaggggttgggagtcaagac 87

                                                                       
Query: 541 agtctggctttgtagtcctggccttagcatttcctgttgagatggggaccttgtggaca- 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 86  agtctggctttgtagtcctggccttagcatttcctgttgagatggggaccttgtggacat 27

                                     
Query: 600 tcttcttcctctaatttagtatttgg 625
           ||||||||||||||||||||||||||
Sbjct: 26  tcttcttcctctaatttagtatttgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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