BAC Information

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BAC

Clone NameMSMg01-165L08
Chromosome11 (Build37)
Map Location 110,784,936 - 110,785,198
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165L08.T7 (MSMg01no165_l08.b1)MSMg01-165L08.TJ (MSMg01no165_l08.g1)
ACCAG363770AG363771
length731780
length of high quality
(start - end)
245 (70 - 314)267 (71 - 337)
definitionCHROMAT_FILE: MSMg01no165_l08.b1 PHD_FILE: MSMg01no165_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:58 2005CHROMAT_FILE: MSMg01no165_l08.g1 PHD_FILE: MSMg01no165_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTGAGGTGGGCGGAATTCA
TTGTTTTTCCCACAAAGAGTACTACAGCACTGTGTAAATGTACCACATTT
TCTGTATCCATTTCTCAGCTGAAGGGCATCTGGGTTATTCCCAGCTTCTG
GCTACTATAATTAAGGCTTCTATGAACATAGTGGAGCATGTGTCCTTATA
TGTTTGAGTATCTTTTGGGTACATGCCCAGGAGTGGTATAGCTGGGTCCT
CAGGTAGTACTATGCCCAATTTTCTGAGGAACCTCAGACTGACTTCCACA
GCGGTTGTACCAGCTTGTTTTCCCACCAACAATGGAGGAGTCTTCCTCTT
TCTCCACATCCTCATCAGCATCTGCTGTCCCCTGATTTTTTGATCTTAGC
CCCTCTGATTGGCGTGAGGTGGAATCTCAGGGTTGTTTTGAATTGTATTT
CCCTAATGACTATGGTCGCTGAACATTTCTTTAGGTGCTTCTCATCCATT
TGCTATTTCTCAGTTGAGAACCCTTTGTTTAGCTCTGTGCACCATTTTTA
CTAGGGTTATTTGGTTCTTTTGTATCCCAACTCCCTGAGTTTCTTGCATA
TCTATTAAAACTACCCCTACTATGCAAACTAATATTTGTTATATGATCTT
TTTCTTTTTTCTGTTTGCTTGTTATTTTTTCCCCTATTTTAATCTCGTAC
CTTTTGCTTTTCCATCCTTTTTTGCCCTTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGATAATTTTAATGCCCTAAATTATTTT
CAGTTATAAATGTAGTCAAAAAGGGGGAGGAGAAAGCACAGCTGTTAAGC
TTGTGTGTGATTGCCTCTCTAATAACCAACCCATCCCTCAGCTGCACTCA
GTGATAGTATTTGTTGACCAAGTTATGGAAATGGCTGTTAAATAAAAAAT
GGGTTATTCTGGAAATTGTAAACATAGTGTATATTTCCCTAGTATACCAA
TATTTTTTTTGTGGTTTTGGGGTTTGGGGATTTTTTGCTCTGTTTTTACC
TCCTTTTTTCTTCCCCACCACTTCTATCATCCCTTTTTTTCTTTCCTCCT
TTATCTCTATTTCCCCCCCCCTTGTTCCACGTTCACGTTATATTCTTGTG
ATTTTTCCTAACCCTTTCCATATCATCATTATACCACCTCCTTTTTACGT
CTTTTTTTCCGCCTCTCTCTAACTTTTATACCTTTCTCTCCCCTTCTTTC
CTCTTTTTTACATCCTCTTTATTTTCCTCCTTCTATCTCCCCATATTTCT
CTTGAGTTAATTCTCCCCTATTTGCTCCTTTTTTTTTTCTCATTTTTTTT
TTTTTTACCTTTCTTATTAGTTTCATATCTTCTTTCTTTCGCGCTGCTTC
GTTTGNTTATTACACTCCCTTCATCGCACCCATAATGCTATACTGACATT
ATTGTGCTATTTCAGTTTCCCCCTTGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_l08.g1 MSMg01no165_l08.g1 CHROMAT_FILE:
MSMg01no165_l08.g1 PHD_FILE: MSMg01no165_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:59 2005
         (267 letters)



>mm_chr11_110784736_110785401
          Length = 666

 Score =  480 bits (248), Expect = e-140
 Identities = 260/264 (98%), Gaps = 1/264 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgataattttaatgccctaaattattttcagttataaatgtagtcaaaaagggggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tatgataattttaatgccctaaattattttcagttataaatgtagtcaaaaagggggagg 404

                                                                       
Query: 61  agaaagcacagctgttaagcttgtgtgtgattgcctctctaataaccaacccatccctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaaagcacagctgttaagcttgtgtgtgattgcctctctaataaccaacccatccctca 344

                                                                       
Query: 121 gctgcactcagtgatagtatttgttgaccaagttatggaaatggctgttaaataaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gctgcactcagtgatagtatttgttgaccaagttatggaaatggctgttaaataaaaaat 284

                                                                       
Query: 181 gggttattctggaaattgtaaacatagtgtatatttccctagtataccaatatttttttt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 283 gggttattctggaaattgtaaacatagtgtatgtttccctagtataccaatatttttttt 224

                                   
Query: 241 gtggttttggggtttggggatttt 264
           |||||||| |||||| ||| ||||
Sbjct: 223 gtggtttttgggttttggg-tttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space:   169506
Effective search space used:   169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)