Query= MSMg01no166_k07.b1 MSMg01no166_k07.b1 CHROMAT_FILE:
MSMg01no166_k07.b1 PHD_FILE: MSMg01no166_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(365 letters)
>mm_chr11_58266985_58267749
Length = 765
Score = 667 bits (345), Expect = 0.0
Identities = 357/361 (98%)
Strand = Plus / Minus
Query: 5 gaattcccaacctcctctctcagcactaactccacacacccacggaatatttcagaagca 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattcccaaccccctctctcagcactaactccacacacccacggaatatttcagaagca 412
Query: 65 ttgcaaattcacccttccacaaagccctgtgaagtctagccacttggtgtcatctgatac 124
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 411 tttcaaattcacccttccacaaagccctgtgaagtctggccacttggtgtcatctgatac 352
Query: 125 cccactctcgcccaaggtcctccccaccctcttctccactgcttcctgtttagagaactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cccactctcgcccaaggtcctccccaccctcttctccactgcttcctgtttagagaactc 292
Query: 185 tctctacaggtggaggaggctgctttccccactgtgattgatcaacccttgggtttccta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tctctacaggtggaggaggctgctttccccactgtgattgatcaacccttgggtttccta 232
Query: 245 aagtttctgattgtttaatcactaccacatgtcatagcagagcacaagaccgcctccttt 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aagtttctgatagtttaatcactaccacatgtcatagcagagcacaagaccgcctccttt 172
Query: 305 attttggctaaagaatgccccactgtgtatatatggcaccttttctttatccattcatcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 attttggctaaagaatgccccactgtgtatatatggcaccttttctttatccattcatcc 112
Query: 365 g 365
|
Sbjct: 111 g 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_k07.g1 MSMg01no166_k07.g1 CHROMAT_FILE:
MSMg01no166_k07.g1 PHD_FILE: MSMg01no166_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(327 letters)
>mm_chr11_58115394_58116120
Length = 727
Score = 582 bits (301), Expect = e-171
Identities = 317/327 (96%), Gaps = 8/327 (2%)
Strand = Plus / Plus
Query: 1 gctgtatttcttaaagatttagtccgatctttcataaataatgaaacttggaaagtcggg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtatttcttaaagatttaatccgatctttcataaataatgaaacttggaaagtcggg 260
Query: 61 aaacaatacaaagcaaaacaagtacttccctgaccgggaatcgaacccgggccgcggcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaatacaaagcaaaacaagtacttccctgaccgggaatcgaacccgggccgcggcgg 320
Query: 121 tgagagcgccgaatcctaaccactagaccaccagggaagagatagtaacagccctctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagcgccgaatcctaaccactagaccaccagggaagagatagtaacagccctctgga 380
Query: 181 ggcactagactaggtgacgacaatggtgacgaacaactgcagttccgtttgtgaaccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcactagactaggtgacgacaatggtgacgaacaactgcagttccgtttgtgaaccaga 440
Query: 241 gactaggcaaccagacaaccagataaccaggcggccagatgctggggacgtaacaatgcc 300
|||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 441 gactaggcaaccagacaaccag--------gcagccagatgctggggacgtaacaatgcc 492
Query: 301 cgaagctgtgaggaatcttgtaggaga 327
|||||||||||||||||||||||||||
Sbjct: 493 cgaagctgtgaggaatcttgtaggaga 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
