Query= MSMg01no166_k08.b1 MSMg01no166_k08.b1 CHROMAT_FILE:
MSMg01no166_k08.b1 PHD_FILE: MSMg01no166_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(313 letters)
>mm_chr11_116178200_116178907
Length = 708
Score = 497 bits (257), Expect = e-145
Identities = 291/305 (95%), Gaps = 5/305 (1%)
Strand = Plus / Minus
Query: 5 gaattcacacttttctccccgacttgctttttagttatgatgtttttgtcccctctgtag 64
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 508 gaattcacactttcctccccgacttgctttttagttatggtgtttttttcccctctgtag 449
Query: 65 aaagcctgactaggacaaagcccttctgtagtgcaggcaggtcctgaatataagagaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaagcctgactaggacaaagcccttctgtagtgcaggcaggtcctgaatataagagaatc 389
Query: 125 ctgcttcagcatcctggaagctggctacagcccaggcgagcacctcttggatctgtgtta 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 ctgcttcagcatcctggaagct-----cagcccaggcgagcacctcttggatctgtgtta 334
Query: 185 cacagctctgacctgggctggcttagattcccactttaagattcagaggtgtgcaggagc 244
||||||||||||| || || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 333 cacagctctgacccggcctagcttagattcccactttaagattcagaggtgtgctggagc 274
Query: 245 ggtgactcaggtgttaaactcactggctgctcttccagaggacccaggttcaatccccgg 304
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 273 gatgactcaggtgttaaactcactggctgctcttccagaggacccaggttcaatccccag 214
Query: 305 caccc 309
|||||
Sbjct: 213 caccc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 708
Length adjustment: 9
Effective length of query: 304
Effective length of database: 699
Effective search space: 212496
Effective search space used: 212496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_k08.g1 MSMg01no166_k08.g1 CHROMAT_FILE:
MSMg01no166_k08.g1 PHD_FILE: MSMg01no166_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(654 letters)
>mm_chr11_116028325_116029382
Length = 1058
Score = 1236 bits (639), Expect = 0.0
Identities = 651/657 (99%), Gaps = 4/657 (0%)
Strand = Plus / Plus
Query: 1 ttgggctagggtaagctcctgccgcaagaaacagattgggggag----gggagggagaga 56
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttgggctagggtaagctcctgccgcaagaaacagattgggggaggggtgggagggagaga 260
Query: 57 gaatacatgaggattccttattcacttatcggcctttccttggcttggagagtattttaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatacatgaggattccttattcacttatcggcctttccttggcttggagagtattttaa 320
Query: 117 aagtagaccatatcctttaccctggaagtggtgacaagtggagccatttggaaagagaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagaccatatcctttaccctggaagtggtgacaagtggagccatttggaaagagaaa 380
Query: 177 ccacatcctgactcaaatcccttgccaggaaactctctataggctgcatctagcacaaag 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacatccggactcaaatcccttgccaggaaactctctataggctgcatctagcacaaag 440
Query: 237 cctgacagtgagttcacatatgataaacatttcatacagggaacagaatttctcagcatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgacagtgagttcacatatgataaacatttcatacagggaacagaatttctcagcatt 500
Query: 297 tcctacctcctctttgtctcttacacttcacccaaacccaccttcacgtgcctaggaaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctacctcctctttgtctcttacacttcacccaaacccaccttcacgtgcctaggaaga 560
Query: 357 aaggcagctggggcgctcatctgtcttctcggtgtgcctagtctcttattaaaatgcaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcagctggggcgctcatctgtcttctcggtgtgcctagtctcttattaaaatgcaaa 620
Query: 417 gtgtatctggggttgtggacacaggggaatgcttgtgtttctcctgtgcaatggcaactt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtatctggggttgtggacacaggggaatgcttgtgtttctcctgtgcaatggcaactt 680
Query: 477 tagcgatctacaagtccaaacgcgttttcgctcacatcacatcaaagaatttctgctatc 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 tagcgatctacaagtccaaacgcgttttcgctcatatcacatcaaagaatttctgctatc 740
Query: 537 tcctatgcattccgtcgcagcttcccagacagggccgggggtacattttctaggggcagc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctatgcattccgtcgcagcttcccagacagggccgggggtacattttctaggggcagc 800
Query: 597 ttgtaatggccaaagtgttccagaatattgtcacgtcttcacatattcaaccaactc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtaatggccaaagtgttccagaatattgtcacgtcttcacatattcaaccaactc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1058
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1048
Effective search space: 674912
Effective search space used: 674912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
