BAC Information

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BAC

Clone NameMSMg01-166O22
Chromosome11 (Build37)
Map Location 65,485,332 - 65,485,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166O22.T7 (MSMg01no166_o22.b1)MSMg01-166O22.TJ (MSMg01no166_o22.g1)
ACCAG364597AG364598
length777752
length of high quality
(start - end)		320 (42 - 361)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no166_o22.b1 PHD_FILE: MSMg01no166_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:34 2005CHROMAT_FILE: MSMg01no166_o22.g1 PHD_FILE: MSMg01no166_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGTAAGGTTTCATCTCCAGATGCAGGAGGCGCATGTTCTATTTCTGT
TTGACATCCTTTGTCACACACGAGCCCCGGACGAGGTGTAAGTCATTCAG
CATTATATACAGAGGGTGAAGTTATGTGGCCATTTATCAACACCAGACCC
TCAAAGTCCTTGGACATCAGGAGAGTATAATTTTAGAATGAACGTAATGA
AAATCTCAAAAGTGATCATTTTTCTCTTATACCTCTGAGATGTGCTAAAA
ATAATTGGGAGATTGTTTTCCAAGTGTGGGTAGGCACAGTCTGGAGGAGG
TCCCTTCCTTGGATGATTCCCCNTGCAAGGCCCAGCACACCTTGGAGTCA
CCTGCCTTGACCCCCCCCCACTTTCAAAAAAACACTTACNGCTGCCTCCC
GGGGAACTTTCCTAGGAATCCCATGTCTGTAGCTCCCCCTACTCCCTCTT
CCTAAGCTGAGGACCTTACTAAGTGTCTCCTTCTAAATCCCTTCTCTATT
TCAGCTGTCGATTATTAGCTCCGCCCACGTTCCCTGTTGTGTAGGCTCTT
ATATGTTGTCCTCATGACTCCTCCCCTTCTATTTCTTCCATCACCCGCCT
GTTGTTTTCTTGTCTCATCTGATCTCCATAAATACTCCTCCACCCTTGTT
TTTATACCCCGCTCCTCCTATTTCCATCATTGCTAGCTATATTCCCTCCC
CCACCTGTTGAGAAATCTCATCCACCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCGGT
GAAGTAGCTGGATATAAAATTAACTCAAACAAGTCACTGGCCTTTCTCTA
CACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCT
CAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAA
GTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAA
AGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGA
TCAACATTGTAAAACTGGCTATCTTGCCAAAAGCAATCTACAGATTCAAT
GCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGAGC
AATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAGCTC
TTCTCAAGGATAAAAGTACCTCTGGTGGAATCACCATGCCTGACCTAAAG
CTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGA
CAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCAC
ACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGG
AAAAACGACAGCATTTTCAACAAATAGTGCTGGCACAACTGGTTGTTATC
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_o22.b1 MSMg01no166_o22.b1 CHROMAT_FILE:
MSMg01no166_o22.b1 PHD_FILE: MSMg01no166_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:34 2005
         (320 letters)



>mm_chr11_65485129_65485848
          Length = 720

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgtaaggtttcatctccagatgcaggaggcgcatgttctatttctgtttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctctgtaaggtttcatctccagatgcaggaggcgcatgttctatttctgtttga 458

                                                                       
Query: 64  catcctttgtcacacacgagccccggacgaggtgtaagtcattcagcattatatacagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catcctttgtcacacacgagccccggacgaggtgtaagtcattcagcattatatacagag 398

                                                                       
Query: 124 ggtgaagttatgtggccatttatcaacaccagaccctcaaagtccttggacatcaggaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggtgaagttatgtggccatttatcaacaccagaccctcaaagtccttggacatcaggaga 338

                                                                       
Query: 184 gtataattttagaatgaacgtaatgaaaatctcaaaagtgatcatttttctcttatacct 243
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 337 gtataattttagaatgaacgtaatgaaaatctcaaaggtgatcatttttctcttctacct 278

                                                                       
Query: 244 ctgagatgtgctaaaaataattgggagattgttttccaagtgtgggtaggcacagtctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctgagatgtgctaaaaataattgggagattgttttccaagtgtgggtaggcacagtctgg 218

                         
Query: 304 aggaggtcccttcc 317
           ||||||||||||||
Sbjct: 217 aggaggtcccttcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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