BAC Information

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BAC

Clone NameMSMg01-167J07
Chromosome11 (Build37)
Map Location 117,834,151 - 117,993,739
singlet/doubletdoublet
Overlap genePgs1, Dnahc17
Upstream geneMgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167J07.T7 (MSMg01no167_j07.b1)MSMg01-167J07.TJ (MSMg01no167_j07.g1)
ACCAG365016AG365017
length716726
length of high quality
(start - end)
548 (36 - 583)521 (75 - 595)
definitionCHROMAT_FILE: MSMg01no167_j07.b1 PHD_FILE: MSMg01no167_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:23 2005CHROMAT_FILE: MSMg01no167_j07.g1 PHD_FILE: MSMg01no167_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,834,151 - 117,834,691)(117,993,219 - 117,993,739)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACT
GTCTCAGGTCTCTAATCCCTGAGATCAAAAGGTAGAGGCAGGAGGACCAG
AAGTTCAAGGTCATCTGAACCTACGGAATTTGAGGCCAGTCTAAGCTTTG
TGAGGCTCTTTCTCAAACAAGACAAACAACCCCCCACCCCCACCCCACAC
ACACACCAGGGGCTGGAGAGAGGACTCAGTGGTTGAGAGCATTGACTGCT
CTTACAGAGGATCCAGCTTCAATTCCCAGCACCCACATAAAGGCGAACAA
ATGTCTGTAACTCTAGCTCCAGGCAATCTGACGTCCTTTTTTTTGGCCTC
TACAGGTACCAGGTATGTACATGCTGCATGCAGGCAAAACACGTACACAT
ATACAGTAAAGACATGCAAAATGAAAACCAAAAAAACCCACAACGCCATA
TCAGGATGAAGCCAAGTATCTCCTTTCCAGCCACCAACCTTGATGCGATG
ATGAATGGCAACTTTGTACTTTCTCTGAGAGGTGCATGACCACAGATGTG
GTATGCTCTTGGGGAAGAGTGGAAGGGTGTCTGGTCTGATTAACAAACAA
GGTTTTCCTGTGGAGGAAGTTTCGTGACCTAGGACAGAGTGTGTCCGCTG
TTGAATCAGGAGCAGGCATCCCTGTTACAGAACCAGGAGAACGGCTGAGA
GGATGCACCAGCCCGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGTTTCCTTTCTTGCTTGGCTCG
TGGCCAGCGGCTCTCATGCCACAGAGCAGTGGTGACAGCCAGCACCCTGG
TGTTGCTCCTGATTCCAGGGGACTCTGAGTGCCAGGAATGGCCTTCAGGA
AATGAACCTGGTCCTGCCTTCACTATGCCACTGACACATCTTCCAGAAGA
TGCCACAAGAGGGAGAAATTAACCGATGGAGGAGGAGGCTCAGAGGTGCA
GGAAGCAAGCAGAAAATGGTCTTGGAGTGGACAGCTGATGATGATTTAGA
GAAACACAAGCTACCTGGCCATGGCATTAAGACAATACAATGCAACTGCT
ATGGATTTGATAAAAACTGATTAAATTTTAATTTGGTTAAATTAAAATTT
TAATTTGATTAAAATTAAATTTTAATTAAATACAATTTAATGTGTTGGAA
TTGGCCTTAATTTCATGTGTTGGAATGGCCCAGTACCACAGCATTACAGA
GCAGTAAGAAGGCCCCGGGCAGATTCAGATGCCAGACTGAGAGTCCAGCC
TCCAGGTCAGCGAGATGAAATACACCTCTCTACTTTTTAAGAATTAAGAA
TGTTACTGTTACTATGTGTATACATGCTGGGTGTGTGTGTGTTGTGTGCG
GCCCCCTTAGTTGTCCTCCCCATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_j07.b1 MSMg01no167_j07.b1 CHROMAT_FILE:
MSMg01no167_j07.b1 PHD_FILE: MSMg01no167_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:23 2005
         (548 letters)



>mm_chr11_117833947_117834894
          Length = 948

 Score = 1023 bits (529), Expect = 0.0
 Identities = 538/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactgtctcaggtctctaatccctgagatcaaaaggtagaggcaggaggacca 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactggctcaggtctctaatccctgagatcaaaaggtagaggcaggaggacca 264

                                                                       
Query: 65  gaagttcaaggtcatctgaacctacggaatttgaggccagtctaagctttgtgaggctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagttcaaggtcatctgaacctacggaatttgaggccagtctaagctttgtgaggctct 324

                                                                       
Query: 125 ttctcaaacaagacaaacaaccccccacccccaccccacacacacaccaggggctggaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcaaacaagacaaacaaccccccacccccaccccacacacacaccaggggctggaga 384

                                                                       
Query: 185 gaggactcagtggttgagagcattgactgctcttacagaggatccagcttcaattcccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggactcagtggttgagagcattgactgctcttacagaggatccagcttcaattcccag 444

                                                                       
Query: 245 cacccacataaaggcgaacaaatgtctgtaactctagctccaggcaatctgacgtccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacccacataaaggcgaacaaatgtctgtaactctagctccaggcaatctgacgtccttt 504

                                                                       
Query: 305 tttttggcctctacaggtaccaggtatgtacatgctgcatgcaggcaaaacacgtacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttggcctctacaggtaccaggtatgtacatgctgcatgcaggcaaaacacgtacaca 564

                                                                       
Query: 365 tatacagtaaagacatgcaaaatgaaaaccaaaaaaacccacaacgccatatcaggatga 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatagagtaaagacatgcaaaatgaaaaccaaaaaaacccacaacgccatatcaggatga 624

                                                                       
Query: 425 agccaagtatctcctttccagccaccaaccttgatgcgatgatgaatggcaactttgtac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agccaagtatctcctttccagccaccaaccttgatgcgatgatgaatggcaactttgtac 684

                                                                       
Query: 485 tttctctgagaggtgcatgaccacagatgtggtatgctcttggggaagagtggaagggtg 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 tttctctgagaggtgcatgaccacagatgtggcatgctcttggggaagagtggaagggtg 744

            
Query: 545 t 545
           |
Sbjct: 745 t 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no167_j07.g1 MSMg01no167_j07.g1 CHROMAT_FILE:
MSMg01no167_j07.g1 PHD_FILE: MSMg01no167_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:23 2005
         (521 letters)



>mm_chr11_117993210_117994130
          Length = 921

 Score =  946 bits (489), Expect = 0.0
 Identities = 513/521 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtttcctttcttgcttggctcgtggccagcggctctcatgccacagagcagtggtg 60
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 530 tcttgtttcctttcttgcttggctcgtggccggcggctctcgtgccacagagcagtggtg 471

                                                                       
Query: 61  acagccagcaccctggtgttgctcctgattccaggggactctgagtgccaggaatggcct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 470 acagccagcaccctggtgttgctcctgattccgggggactctgagtgccaggaatggcct 411

                                                                       
Query: 121 tcaggaaatgaacctggtcctgccttcactatgccactgacacatcttccagaagatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 410 tcaggaaatgaacctggtcctgccttcactatgccactgacacatcttccagaagatacc 351

                                                                       
Query: 181 acaagagggagaaattaaccgatggaggaggaggctcagaggtgcaggaagcaagcagaa 240
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 acaagagggagaaattgaccgatggaggaggaggcgcagaggtgcaggaagcaagcagaa 291

                                                                       
Query: 241 aatggtcttggagtggacagctgatgatgatttagagaaacacaagctacctggccatgg 300
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatggccttggagtgggcagctgatgatgatttagagaaacacaagctacctggccatgg 231

                                                                       
Query: 301 cattaagacaatacaatgcaactgctatggatttgataaaaactgattaaattttaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cattaagacaatacaatgcaactgctatggatttgataaaaactgattaaattttaattt 171

                                                                       
Query: 361 ggttaaattaaaattttaatttgattaaaattaaattttaattaaatacaatttaatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ggttaaattaaaattttaatttgattaaaattaaattttaattaaatacaatttaatgtg 111

                                                                       
Query: 421 ttggaattggccttaatttcatgtgttggaatggcccagtaccacagcattacagagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ttggaattggccttaatttcatgtgttggaatggcccagtaccacagcattacagagcag 51

                                                    
Query: 481 taagaaggccccgggcagattcagatgccagactgagagtc 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  taagaaggccccgggcagattcagatgccagactgagagtc 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)