BAC Information

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BAC

Clone NameMSMg01-170I06
Chromosome11 (Build37)
Map Location 88,683,483 - 88,683,791
singlet/doubletsinglet
Overlap genenone
Upstream geneEpx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I06.T7 (MSMg01no170_i06.b1)MSMg01-170I06.TJ (MSMg01no170_i06.g1)
ACCAG367055AG367056
length726729
length of high quality
(start - end)
311 (45 - 355)47 (77 - 123)
definitionCHROMAT_FILE: MSMg01no170_i06.b1 PHD_FILE: MSMg01no170_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:29 2005CHROMAT_FILE: MSMg01no170_i06.g1 PHD_FILE: MSMg01no170_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCTCTCTCTCTCTTTTTTTTTTACCAAAAATTCCTTTTGCAGG
TCGCAGCTGAGGCTTCACAGGGGCGACATACCATGCAAATATGTATTTTT
TTTTCAGTTATGATGTATACAGTTTTTAGTTTGATTTATTTTTGGTGTCA
GAAACAAAATGGAAGTTAGCTCTTTAAAAATGAGTGTGGCTGGCTGAATA
AATAAATAATATGCTCTTGGCCAGTACCTGCCAGTACCTCCTTAATTGCC
CATTGATTCTTTAATTCTCTGCCTTTCACCATCTACGAAATTAAGAGGCC
ACAGAGCATGGTTTTTTTTTTTCCCAAACAANCCCCAGAATCAGGGATTT
TCGAAGGTCTGGTCCTTCCTGCACAAATTAAACCTATCATTGAGGGGCGT
GAAGTCATCCCAGCACGGAAGCCTGGTGTCCTGCTTGTACCCTTCCCAGG
CTTCTGTGTCGTCACCTGTTACTTCCGTTTCATCCATGTGCTGTGTCTCC
TCTGGCCCGTCACTTTTGTCACCTCCCTACCGCTTTGTTTTTCCTTCGTG
CTCTCCTGTTTGCAAGTTCGACCTTAATTTTTACCCTTCTCTTATCTTCC
ACCTTTTTCTCCTTTTTTCTCTCCCCCCCTTCTTTTTTTTCTTTTTTTCT
CCTCCCTCTTTCTTTTTTTTTCTCCG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCCCTGCTTGAACCAACCCA
GCCCCTCCTCTTGCTCTGGTCTGAAAATGGCCAGAAATAGTTTCCATTGT
CATTGACTGAAATTTCCACTTTGATGATGGGAACAAATATTTTTCTTACC
CTTTCCTGAAACAGGAATAAATTTTTCCATACAGGTTCTTCTAATTGGGG
CCTGAGGTTCAAATCTTAAGAAAAAAAAAAAAAGGCAGCCAACATTTAAA
AAGGCAAGAAAAGGGCATTTGCCTCTTTTCTAAAGAGGTTGACCCTGAAC
CTCCGCTTCATATTTTTTAAGGGAGGACCCATCCCCTTGGAGCATCCATA
GTTCTTCCTCTATACTCTTGGAAGTTTAAAGAAGCCCCTGCAGGGCCCCC
AGGAGCTTACATTTCAAACATGGGGCAAAGGTATCCTGCCCAACACAGGA
TCTCCCTGGAGGCACCCACTAACACAACTCTTCTCATACCTGTGTTTGCT
TTCCCACCTCTCTCTCCCGAAGCCTCCCCTTAGCACGATGGGAGGGCTCC
TCAGGTGAGCAAGCTACTGCAGGGAGCAGATACCGAAAAGGAGACAGCCT
GACTCCTTCCTCTGCAGGCAACTCTGAGGGCTCATCCAGGGGAAAGGTCA
GCATGAGTTCTGGCGCTACAGAGTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i06.b1 MSMg01no170_i06.b1 CHROMAT_FILE:
MSMg01no170_i06.b1 PHD_FILE: MSMg01no170_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:29 2005
         (311 letters)



>mm_chr11_88683279_88683991
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctctctctc-tcttttttttttac-caaaaattccttttgcaggtcgcag 62
           ||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct: 513 gaattcatctctctctctctttttttttttttacacaaaaattccttttgcaggtcgcag 454

                                                                       
Query: 63  ctgaggcttcacaggggcgacataccatgcaaatatgtatttttttttcagttatgatgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgaggcttcacaggggcgacataccatgcaaatatgtatttttttttcagttatgatgt 394

                                                                       
Query: 123 atacagtttttagtttgatttatttttggtgtcagaaacaaaatggaagttagctcttta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atacagtttttagtttgatttatttttggtgtcagaaacaaaatggaagttagctcttta 334

                                                                       
Query: 183 aaaatgagtgtggctggctgaataaataaataatatgctcttggccagtacctgccagta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaatgagtgtggctggctgaataaataaataatatgctcttggccagtacctgccagta 274

                                                                       
Query: 243 cctccttaattgcccattgattctttaattctctgcctttcaccatctacgaaattaaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cctccttaattgcccattgattctttaattctctgcctttcaccatctacgaaattaaga 214

                    
Query: 303 ggccacaga 311
           |||||||||
Sbjct: 213 ggccacaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space:   212608
Effective search space used:   212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)