BAC Information

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BAC

Clone NameMSMg01-170K18
Chromosome11 (Build37)
Map Location 91,151,799 - 91,152,050
singlet/doubletsinglet
Overlap genenone
Upstream geneHlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170K18.T7 (MSMg01no170_k18.b1)MSMg01-170K18.TJ (MSMg01no170_k18.g1)
ACCAG367162AG367163
length838781
length of high quality
(start - end)
282 (46 - 327)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no170_k18.b1 PHD_FILE: MSMg01no170_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:41 2005CHROMAT_FILE: MSMg01no170_k18.g1 PHD_FILE: MSMg01no170_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGCCAGTGAGGGACTCTGTTACNAAAAAAAAAAAAAAAAAAAA
CAAAAAAAAAAAAACCAAAAACCCAAAAAACAAAAACAAAAAAAACAACA
ACAACAACAAAAAAAAAACCTAAATTTCTCAATAATGGTTCCTGTCCTGA
TTTATAGTGTTATCCAACTTAAAAAAAAATGAGGTCTCTATGAATTTGTT
TCTCCACTGGGGAAATTAATGTGTTAATAGTCGACCCCCATGCTAAAGTT
AATTCTCTTAAGTAGCTCCAGGATAACAGCAACTGGTGAGATAAGACAGG
GAAGACTTGAGGGATTTAATGATTTTCCCCCAGCCCCCCCCCNNNTNNNT
TNTTTTTTTTTTTNNNTNTNGCCCCCCCTCCCAAAAAAAAAAAAAAAATA
CCTGTGGTGGGGTTGCCTCTCCCCCTCTTTTCTCTTCTCCTTCTTTCCTT
TCCCCTTTTTTTTTTTCCCCACTTTTCTCTCTTCCTCCCTTCCTTTTACC
TATTTCATTTCTCTTCCCCCCCTTTCTTCCCCCTTTCTTTCCCCACCTAT
ACTCTCATTTTTTCCCCATATTTCCTCTTTCCCTTTTTCTCTTCCTTTAC
GCTTTCCCCCTATTTATTTTTCTCTTATCCCCCCATCCCCCTATTTTAAC
CCTATAACTTATTACTTCTATTTACCCCATTCTCCTTTCTCTCCCCCCCT
TTTTCCCCATCTCCTTTCTCCCCCTCCCCCCTTCTTCTTTTTTTCTTTTT
TCTATCTCCCCCCCTTTTTCCTATTTTCCCTTCTCCTT
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTCACCTCTTGATGCAG
AAACAAACATGTCTTCATTTCTCTTCTATTGCTGCGATAAAGCTCTCTGA
TGAAAGCGGTTTGAAAGAGAAAGTTTAGTTTAGGCTTATGGCTTGAGAAG
GACAAACAACAGGTGGTGATAGTACGGTGGCAGAAGCAGCACACTGACTG
GTCACACAGCAACCACACAGGAAGCAGAGAGTGAGCAGGAAGTGAGGTCA
GCCAATAATGCCTCAAGGGCAGCCCTCAGCTACACACATCATCCAGCAAT
CTCCTCATTCTTCCCTTTATTTGACCCCCCCCCATTTAAGCACATAAACC
TATGGGGGGGGGGCACCCCCCACAAAAAAAAAAAAAAATCATCTTAGCCG
TTTTTACACCTGACCCCGCCCGACCCATTGTTCACTCGACACATATTTTC
CCCGCGCCGCGCCCCCCTTGTTTCTATCTTCTCCCTCCCCCCCCCTTTTT
CCCCCCCCCTTTTCCTTTCCCCCCCTCCCCTCCCCTCCCCCTCTTTCTTC
TTTTTTTCTAGGCCATTTTCACAACCTCTCACGCCCCACTCCCCCCCTTT
TTATACTTTCCTTTTGAGTTACCCCCCTCTCCTCCCCCTCCCCTTTTTTT
TTCTCTTTTCCTCCTCTTACTCCCCCAAATCTGTATCTTCTTTCTTCCCT
ATCTTCAATTTTCTCCCACACTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_k18.b1 MSMg01no170_k18.b1 CHROMAT_FILE:
MSMg01no170_k18.b1 PHD_FILE: MSMg01no170_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:41 2005
         (282 letters)



>mm_chr11_91151476_91152158
          Length = 683

 Score =  389 bits (201), Expect = e-112
 Identities = 249/281 (88%), Gaps = 32/281 (11%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagccagtgagggactctgttacnaaaaaaaaaaaaaaaaaaaacaaaaaaaa 64
           ||||||||||||||||||||||||||||||  |||||||||||||||||||         
Sbjct: 575 gaattccaagccagtgagggactctgttac--aaaaaaaaaaaaaaaaaaa--------- 527

                                                                       
Query: 65  aaaaaccaaaaacccaaaaaacaaaaacaaaaaaaacaacaacaacaacaaaaaaaaa-- 122
                  |||||||||||||||  ||||     |||||  ||||  ||||||||||||  
Sbjct: 526 -------aaaaacccaaaaaac--aaac-----aaaca--aaca--aacaaaaaaaaaac 485

                                                                       
Query: 123 acctaaatttctcaataatggttcctgtcctgatttatagtgttatccaactt-aaaaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 484 acctaaatttctcaataatggttcctgtcctgatttatagtgttatccaacttaaaaaaa 425

                                                                       
Query: 182 aaatgaggtctctatgaatttgtttctccactggggaaattaatgtgttaatagtcgacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaatgaggtctctatgaatttgtttctccactggggaaattaatgtgttaatagtcgacc 365

                                                    
Query: 242 cccatgctaaagttaattctcttaagtagctccaggataac 282
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cccatgctaaagttaattctcttaagtagctccaggataac 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)