BAC Information

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BAC

Clone NameMSMg01-170N09
Chromosome11 (Build37)
Map Location 86,575,775 - 86,576,077
singlet/doubletsinglet
Overlap genenone
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc
Downstream geneDhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170N09.T7 (MSMg01no170_n09.b1)MSMg01-170N09.TJ (MSMg01no170_n09.g1)
ACCAG367276AG367277
length733701
length of high quality
(start - end)
309 (47 - 355)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no170_n09.b1 PHD_FILE: MSMg01no170_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005CHROMAT_FILE: MSMg01no170_n09.g1 PHD_FILE: MSMg01no170_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAGCCGGCAGCCCCCACCGGGCTTTTTTTTTTTTTAAGCCTTT
AAAAAAAATTTAACATCTGTGTATTTGACATTACAGAAGCTGAAAAATAT
TTAAAGTCATAAACTAGGTTATAATTCCTTAAAACTTTATTACTGATTTA
AATAAAACTTTACTAAGTTTCAGTCCTTAACTAGTCTGCCCTGAGGTAGT
GAAAGCTTACTACAACTTGTTACTGAGAACTATTTGAGTGTGTCAAAACT
AATTGTTAAAGGAATAGGTTTGTGGGTCATAGTTTGCTTTGACCTGAAGA
CAGTATTAATTCAATACCAAGAACGNTNCGCATATATAGAACTGGGGAAT
ATAGAANTGGGGAGATTACTAAAAAACAAAATGCTTGGTATGTAAGCATG
GAGACTGAGTTTGAGTCCCATTCAATAGTTTTAAAAGTTTTGTTCTTGCT
TTTCTTTTTTTTAAATTGGCACACAGTGCCATATTTATAAGTATGCGCTT
ATAATCCTGTTCTTGGAGGCAGGAGTGACCAAAATGAGGCGAACAGCCCC
TGAGAATCATCTGAGGTTGCCTTCTGGCCTCCATGTTCACAGATTTAACA
CGTGTGCGGGAAAGCCACGTAACAAATCATTCCAACTACGTACTCTCATT
GCCCTTTCCATAGAACCTCTCCAGCTTTTGCGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTATTAATGTGATTCTGCCAG
ACCTGTTTCTGGTGCCCATGGAGGCTAGAAGGTGGCATTGGATCGCGTGA
AACAGAAGTTACTAACGATGGGTGCTGGGAATCGAACCTGGGTGCTCTAC
AAGAGCGGCGAATGCTTTTAATTGATGATCTATCTTTCCAGCCCCTAACC
TGCCTTTTTTTTTTTTTAAAGATTTCTTTATTTAATTACTTGTGGGTTTT
TGTTGTTGTTGTTTATTTGTTTTTTTTTGAGACAGGCTTTCTCTGTGTAG
CCCTGTTAGTTATTTCCTANACGATTCCCTGCCTCTACCTCCTGAGTGCT
GGAATTAAGGATGTGAACAAAAAAAAAAAAACCTTAGGGATTTATTTCTA
TTATTATTTTAACATTTTATGAGTCTTTATGAATTTTACTTCATTACACC
ATTCCCACTCATCTTCCTGTCCCTTCGTATCTGCCCTTACAACCTCCCTA
CCAAAAGAATTTATTATATTCACTTACCCTCACCCACTCACCCTTTTTTT
CCCCCTCTTTCCCTCTTCCACATTCACACCTTTATTTATACTTGTCTTCT
TCAGTGTGCTGCCGTTCCATTCTATGTCATCCATCCTTTTTTGTCTCTTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_n09.b1 MSMg01no170_n09.b1 CHROMAT_FILE:
MSMg01no170_n09.b1 PHD_FILE: MSMg01no170_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:54 2005
         (309 letters)



>mm_chr11_86575571_86576277
          Length = 707

 Score =  571 bits (295), Expect = e-167
 Identities = 302/305 (99%), Gaps = 2/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagccggcagcccccaccgggctttttttttttttaagcctttaaaaaaaatt 64
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 507 gaattcttagccggcagcccccaccgggc--tttttttttttaagcctttaaaaaaaatt 450

                                                                       
Query: 65  taacatctgtgtatttgacattacagaagctgaaaaatatttaaagtcataaactaggtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taacatctgtgtatttgacattacagaagctgaaaaatatttaaagtcataaactaggtt 390

                                                                       
Query: 125 ataattccttaaaactttattactgatttaaataaaactttactaagtttcagtccttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ataattccttaaaactttattactgatttaaataaaactttactaagtttcagtccttaa 330

                                                                       
Query: 185 ctagtctgccctgaggtagtgaaagcttactacaacttgttactgagaactatttgagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctagtctgccctgaggtagtgaaagcttactacaacttgttactgagaactatttgagtg 270

                                                                       
Query: 245 tgtcaaaactaattgttaaaggaataggtttgtgggtcatagtttgctttgacctgaaga 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtcaaaactgattgttaaaggaataggtttgtgggtcatagtttgctttgacctgaaga 210

                
Query: 305 cagta 309
           |||||
Sbjct: 209 cagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 707
Length adjustment: 9
Effective length of query: 300
Effective length of database: 698
Effective search space:   209400
Effective search space used:   209400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)