BAC Information

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BAC

Clone NameMSMg01-171B24
Chromosome11 (Build37)
Map Location 63,829,586 - 63,829,878
singlet/doubletsinglet
Overlap geneCox10
Upstream geneTekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1
Downstream gene2810001G20Rik, EG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171B24.T7 (MSMg01no171_b24.b1)MSMg01-171B24.TJ (MSMg01no171_b24.g1)
ACCAG367468AG367469
length755725
length of high quality
(start - end)
323 (40 - 362)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no171_b24.b1 PHD_FILE: MSMg01no171_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:16 2005CHROMAT_FILE: MSMg01no171_b24.g1 PHD_FILE: MSMg01no171_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCCTATCTGGGTTTATCATATGATTCCGTCTTCAAAAAAAAAAAAAAT
GTGGGGAGAGGAGGCTGTGGAGATGGACAGTTCAGTAGTCCAGAGTGTGC
GATGTCCTGGAGAGGACTGAGTTTGAGTCCCACCGCCTGCACCAGGAGGC
AGCTCTCAACTGCCTGTAATTCCAGCTTTAGGGGATCCAATACATTCTTC
TAGCCTCTGTGGACACACACACACATAAAGTGAAATAAATCTTTTTTTCT
AAGTGTGCATAGGGCACAATATTGTGAGCAGAAATACAAGTCATTTGGTG
AGTCTAAGACTATTTGTGTCCCCCCCCCACAGGTCAGGAGACCGGAGGGC
CGGCCACACTCTCTCAGCTCCCATCGTACCTCACAAGCATGAGGTTGTGC
TCCTGGTGGTCAGACAAGGTCTCAGACAAGAACAGACAAATACAGTGTGG
CTTACTGCAAACAGAAGTGAAGGGTGTTCTGTCTTCAACAGTGCTCTCTC
CTCTCTCCCTCTCCCTCTCTCTGACACACAGATCTGACTATGAGTAAATT
ATAATGAGGCAAACTAAAACTGCAGCCAACGAAGTACATCCTTATTCGTG
GGATCAAGAGAAACCAACGGGTATGTCTCTTTCCATTGCCCAGAGTCGGC
TCACACAGTGCCCAACCGAAGAAAGAGCAAACTCTCCATCGCAGCACTTC
ATGCT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGTGCATAGAACAGGCTACC
CAGAATCCTCCTTTGACCTCTGCACCCGCGCACACACACACACACACACA
CACACACAGCCAGATGCACTCCTCCATATACATGCACACATATGGGTACA
CCACAAATGCATACAACACATACACACATGATTTTTTTTTTTAAAGAGAA
GATTGATTGCAAATAGCAAAGTGTTGATGACTGCAGAGTGGTAAGGAGTG
AGGGACTTTGTTTATGCTGGTTGCCAACACGCCTTTGTCTCAGTAACCTT
GAAGGACAAGAATCATCCTTATCGCCCTCCCCCCACAAATTAGGTAACGC
ACAGAAGCCCCTGGGTTTGCTTGAGCCAACATACAAAGGCTGAATTCTTA
CAGGCCAAGGAGCCACCGCCTCCTGGATTCTTCTCTAGGGAAATTAGGGA
GATGTTGAAACTCCCTCCATGTCTGCCCGAACCCTTCGGCAAGAATTACA
GGGGACTAGGGAAGGGCATGTTCCAGCCACCCCCACCCACTTGTTTCCAT
TGAGGAGGGAGAGAGCCTGTGAGGGGATTTGCTCTGGCCCTGGCTTTGCA
TGATGAAAGAGTTGCATGTAACCAGAAGGCCTGGGTAATAACAGTGCGTC
ATGAAGAGTGGTTCAGAAACAGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_b24.g1 MSMg01no171_b24.g1 CHROMAT_FILE:
MSMg01no171_b24.g1 PHD_FILE: MSMg01no171_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:16 2005
         (284 letters)



>mm_chr11_63829229_63829916
          Length = 688

 Score =  398 bits (206), Expect = e-115
 Identities = 268/304 (88%), Gaps = 31/304 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagtgcatagaacaggctacccagaatcctcctttgacctctgcac-c-cg--cgcac 56
           |||||||||||||||||||||||||| ||||||||||||||||||||| | ||  |||||
Sbjct: 650 aagagtgcatagaacaggctacccagcatcctcctttgacctctgcacgcacgcacgcac 591

                                                                       
Query: 57  acacacacacacacacacacacaca----------gccagatgcactcctccat--atac 104
           |||||||||||||||||||||||||          |||||||||||||||||||  | ||
Sbjct: 590 acacacacacacacacacacacacacacacgcacggccagatgcactcctccatacacac 531

                                                                       
Query: 105 atgcacacatatgggtacaccacaaatgcatacaacacatacacacatgatttttttttt 164
           ||||||||||||||||||||||||||||||| ||        ||||||||   |||||||
Sbjct: 530 atgcacacatatgggtacaccacaaatgcattca--------acacatga---ttttttt 482

                                                                       
Query: 165 taaagagaagattgattgcaaatagcaaagtg----ttgatgactgcagagtggtaagga 220
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 481 taaagagaagattgattgcaaatagcaaagtgttgcttgatgactgcagagtggtaagga 422

                                                                       
Query: 221 gtgagggactttgtttatgctggttgccaacacgcctttgtctcagtaaccttgaaggac 280
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 421 gtgagggactttgtttatgctggttgccaacacgcctttgtctctgtaaccctgaaggac 362

               
Query: 281 aaga 284
           ||||
Sbjct: 361 aaga 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 688
Length adjustment: 9
Effective length of query: 275
Effective length of database: 679
Effective search space:   186725
Effective search space used:   186725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)