BAC Information

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BAC

Clone NameMSMg01-171C09
Chromosome11 (Build37)
Map Location 3,612,574 - 3,612,808
singlet/doubletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171C09.T7 (MSMg01no171_c09.b1)MSMg01-171C09.TJ (MSMg01no171_c09.g1)
ACCAG367483AG367484
length733728
length of high quality
(start - end)
316 (45 - 360)235 (429 - 663)
definitionCHROMAT_FILE: MSMg01no171_c09.b1 PHD_FILE: MSMg01no171_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:18 2005CHROMAT_FILE: MSMg01no171_c09.g1 PHD_FILE: MSMg01no171_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACACTGTATTTAGTGATTCTCGCCCATGTATTAGTCAGGGTTCTC
TAGAGGAACAAAACTGAAAATAAGTATAAATATATAACACAAAGGAGGGA
TTTAGGGGAATCAGCTTACACTGTTTCATCTGCATAGTCCAACAATGTCT
GCCTGCACTCTGGAGACTGAGGCCCCAGTGTCTGCTCAGTCCATGGGTGG
GAGACCGGGAGGTGTATGTGTAGGGTACTCCTCGGTAGCCCTGACCGGGT
GCTGAAGACCTGCAGGATTCCTGGAGAGCCACTGGCTTTTCTGGGTTGGT
TTGTTTATTTGTTTTTCACCCCCCCCCCGCCCCCACTGAAGAAACTGGGT
TTTGATGTCAGTAAAGCACCCCAACTGAAAAAGAAGTCAACAGAGTGGAG
ACGCTCACAGCAGGTTATAAAGGAGAGTAGACTGTCTTCCCCACATCCAT
GTTTATATCTAGGCTGCCAAGGCAAGGTTCTGCTCATTCTGTAGAAACCC
CCGCCCTTTACGAAATTTCCTCACTGAGTCCTCCAAATGAGTGTCTCTTA
TCTTGTTCCCAACTTTAGCTACCTACCACTCATTCATTCCCTTCCATTAC
TGCTCTGCTACCCCTGGTCTTATATGCTTCTTGTTTTAAATCAATATCTA
TCTTTTTCTCCCACTCCCCTATTATCCCCCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTGGATGGCACCTGGAGGACAGA
CAGGTCAGAGGCCATGGGTCCCTCACGTGAGCTCTGGTCAGACCACCTAC
AGACCCAGGGTCAAGCACCAGAGGAATATCTACAAAGCTTTGGAGGGGTG
GGGTATAGGCTAGGAGTCTGGTGGGCAGTGGGCCATGAAGCTCCTCCTGG
GGGTCACAGTTGGCTTTCAAATGGGTCAAACATCCTCCCGTCCAGGGAGC
CCTGAGCCCAGCTCATCGAGTGGCATGATAGAGATGTATTTCCCTCGGAA
CTTGTTGTTTATGGCCCCCCCCCCCCAGAGGCTCCAGCCATGCTTAGAGA
ACACGTGGTGGGCAGCAAACAAAAAGTGGTGGCTCACCTGGGACCAGACC
GGCTGGATATGAGCATAGGGAGACACAGACCCAGCCAGGAAAGGACAGCC
TTCCAAATGTCCAGGATGCATGGCTCCATCCTGTGTGTCCCAGGAATAAG
CCCGGCTACTGCTCGTCTTAGGGACCCTGACCTTGCCTAGCCCATGGGGG
TATGGAATGGACAAGAAGCCCCTGCCTGGCTCTTAGGAAACCGTGGGGTG
GGGAAGCCGAGTCTGTGTCCAGGAACTGGAAGGACTGCTTGCCTGAGGGT
TTCTTGTCCACCATATTTACCCCTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_c09.g1 MSMg01no171_c09.g1 CHROMAT_FILE:
MSMg01no171_c09.g1 PHD_FILE: MSMg01no171_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:18 2005
         (235 letters)



>mm_chr11_3612374_3613008
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggctcacctgggaccagaccggctggatatgagcatagggagacacagacccagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggctcacctgggaccagaccggctggatatgagcatagggagacacagacccagccag 260

                                                                       
Query: 61  gaaaggacagccttccaaatgtccaggatgcatggctccatcctgtgtgtcccaggaata 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gaaaggacagccttccaaatgtccaggatgcatggctccatcccgtgtgtcccaggaata 320

                                                                       
Query: 121 agcccggctactgctcgtcttagggaccctgaccttgcctagcccatgggggtatggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 321 agcccggctactgctcgtcttagggaccctgaccttgcctagcccatgggggtgtggagt 380

                                                                  
Query: 181 ggacaagaagcccctgcctggctcttaggaaaccgtggggtggggaagccgagtc 235
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ggacaagaagcccctgcctggctcttaggaaaccgtggggtggagaagccgagtc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)