BAC Information

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BAC

Clone NameMSMg01-171O22
Chromosome11 (Build37)
Map Location 70,130,925 - 70,270,092
singlet/doubletdoublet
Overlap geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16
Upstream geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12
Downstream geneZmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171O22.T7 (MSMg01no171_o22.b1)MSMg01-171O22.TJ (MSMg01no171_o22.g1)
ACCAG368007AG368008
length762758
length of high quality
(start - end)		317 (46 - 362)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no171_o22.b1 PHD_FILE: MSMg01no171_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:16 2005CHROMAT_FILE: MSMg01no171_o22.g1 PHD_FILE: MSMg01no171_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,130,925 - 70,131,237)(70,269,805 - 70,270,092)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGGGAGGATGAGAAGGCAAAGGAGCTACAGAGCCCAGGAATGA
TCATTAGGGCTTCTGGAGGCCCGGGCGACACCCAGGGAAGTAGTTCATAG
AACCAGATGTGGACTGTTAACAGATGTGTGGGCAACGGTGCAAGGAGGAC
CCTGTGCCTTACCCTCGGTCCTGGGCTCCAAGCAGTCCGACCTCAGTGAC
CTCGCGGCACCAGACCTGCAGCTCTGGGTCCTCCTTCACATCGGTGTCAC
TCCTGTAGAAAAGCTCAACCATCCTTTCCACATACCTGTTCCCCAGAGAA
GACAGCACTCAGCCTCATACTATCCCAGGCTTTCGAGACCGGTTGCCCCC
CCCCAGCGGCCCCCACCTCTGTTGCTCTCACAAAATGATGATCTCCCACA
GCCTGAGGGCATCCTGGGCATACAGAGAAGATTTCACACCCAAGAGTCCA
CGGTCAGCCAAGTCATCCGGAGGGCAAAAGGAGCGGTAGGTCAAACACGA
CGTGGCTCTCTGGAGAATGTCCACATGGCCTCCGCTCCCCGTGCTCACCA
CCTGAGGACAAACCAGGGTCAAGCAAGCCAGATAACTGAGTGGGGAGATC
AGGGTGTACAGGTCATTCAAGTATGACGCGAGAGAAGGACAGCCCTCCTG
TGTATAACTTATTTTGTTAGAAAATTATGTGCAAGGTATTCCCTTTGATA
ATTCTTTCTTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATGACATCACCTGAAACCGGGACATAA
TAAAATCTTTCATGCAATAGCAGCCCTGGCTAGGACAAGGAGGCCAGAAA
GAATCTGACAAAGCCACACTGGTCCCCCTTCCTGCTTTACTGTGGAGTGG
AGTTGGGGGACTGGAGATTTAATCCATGCCACATCTCAATGTTGTCCCTT
GTTCATTACCACACTAAGGAGAACCCTTTATGTCCAGTCATATTCCTATA
CCACTGTCCTAATCTAGTCTAAGCACACTATAACTCTCCCTGTACTTTAT
TCTGAAGGTTTCGGNGTCCCTTCCAANTCTGAACCCGTTGTGTTTTTCTC
TTGTTAATCTGCCTTTTTTCCCTTAAAAAAAAAGAAAAAGGTGNTTGGGG
GGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTATGTTTCTATTATCCCCCC
CCTTCTCCCCAACCATATTTTTTTATATTTTATCTTTTTTTTCTATCTAT
TATAATGCTACTCCCATCCCCAATTTTTAATAAATGCAATCTCAATCTCA
AAACTCATATATAATAATTTATTGTTATATTTTTTTTTTTTCCCCCCCCC
CCAGTCCACATATTTTTTTTTTTTTTTTTTTTTTTATTTTATTCTCAGAT
CTCAATCACATTTTAATATTCACTCTTTTCTATTATTTTTTTTTTTTTAT
TCTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_o22.b1 MSMg01no171_o22.b1 CHROMAT_FILE:
MSMg01no171_o22.b1 PHD_FILE: MSMg01no171_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:16 2005
         (317 letters)



>mm_chr11_70130721_70131437
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgggaggatgagaaggcaaaggagctacagagcccaggaatgatcattaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgggaggatgagaaggcaaaggagctacagagcccaggaatgatcattaggg 264

                                                                       
Query: 65  cttctggaggcccgggcgacacccagggaagtagttcatagaaccagatgtggactgtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctggaggcccgggcgacacccagggaagtagttcatagaaccagatgtggactgtta 324

                                                                       
Query: 125 acagatgtgtgggcaacggtgcaaggaggaccctgtgccttaccctcggtcctgggctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagatgtgtgggcaacggtgcaaggaggaccctgtgccttaccctcggtcctgggctcc 384

                                                                       
Query: 185 aagcagtccgacctcagtgacctcgcggcaccagacctgcagctctgggtcctccttcac 244
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 aagcagtccaacctcagtgacctcgcggcaccagacctgcagctccgggtcctccttcac 444

                                                                       
Query: 245 atcggtgtcactcctgtagaaaagctcaaccatcctttccacatacctgttccccagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcggtgtcactcctgtagaaaagctcaaccatcctttccacatacctgttccccagaga 504

                        
Query: 305 agacagcactcag 317
           |||||||||||||
Sbjct: 505 agacagcactcag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_o22.g1 MSMg01no171_o22.g1 CHROMAT_FILE:
MSMg01no171_o22.g1 PHD_FILE: MSMg01no171_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:16 2005
         (292 letters)



>mm_chr11_70269605_70270296
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgacatcacctgaaaccgggacataataaaatctttcatgcaatagcagccctggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 tatgacatcacctgaaaccgggacataataaaatctttcatgcaatagcagtcctggcta 429

                                                                       
Query: 61  ggacaaggaggccagaaagaatctgacaaagccacactggtcccccttcctgctttactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggacaaggaggccagaaagaatctgacaaagccacactggtcccccttcctgctttactg 369

                                                                       
Query: 121 tggagtggagttgggggactggagatttaatccatgccacatctcaatgttgtcccttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggagtggagttgggggactggagatttaatccatgccacatctcaatgttgtcccttgt 309

                                                                       
Query: 181 tcattaccacactaaggagaaccctttatgtccagtcatattcctataccactgtcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcattaccacactaaggagaaccctttatgtccagtcatattcctataccactgtcctaa 249

                                                           
Query: 241 tctagtctaagcacactataactctccctgtactttattctgaaggtt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctagtctaagcacactataactctccctgtactttattctgaaggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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