BAC Information

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BAC

Clone NameMSMg01-172G08
Chromosome11 (Build37)
Map Location 50,870,024 - 50,870,330
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1
Downstream geneZfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G08.T7 (MSMg01no172_g08.b1)MSMg01-172G08.TJ (MSMg01no172_g08.g1)
ACCAG368320AG368321
length718726
length of high quality
(start - end)
311 (45 - 355)44 (73 - 116)
definitionCHROMAT_FILE: MSMg01no172_g08.b1 PHD_FILE: MSMg01no172_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:51 2005CHROMAT_FILE: MSMg01no172_g08.g1 PHD_FILE: MSMg01no172_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGCCTCAGACTCCTAGATAGCTGAAGTGATAGACTCTCCCAGG
CCAGGCTAGTAGGTATTGTCAGCCACACAAAAAAATTATAAATACACCCA
GTCCCCCCCCTCCAGTTTTTTGATGCCACAGAGCAGAAATCAGTAGTTAG
GGTTTTGATTCTTTTATCAGCACTTAGAAGCCAAGCTTAACCTGTCACCA
TTCACATCTGCGTCAGCTACAACTGAAGCCACAATGTATTTGTTGCAGCT
CAGTAACTTTCAAAGCTCTTACCTGAGGCTTATTTACTTCAAGGTATTCA
AGCAAAGTTTNATTCCTCCTTGCCAANACCACCTTAAGGTTTTCTTTTTT
ATTCCATCAACATCCCCGAAAAAAAAAAAAAAAGATTGGTGTCGTCTGTT
TCTTGAATTAGAATTACTGGGTCGAGGACTGCTAAACCCTAATGTGTTTA
GGGTCGGACTGATGCTATTGTATACAAATGCCAAATTCTGAACCTCATGA
TCTTGTTACCCTCACATGATTGAATTCTCCCCCACACTGATCTTTGCTGT
GCAAACCTTCCTCCTCAATTTTAAGCCATTGGTTATATAATTATGCCCAT
AGTCTGTAATTTGTGTTTAATAGAGGCACCCGGTATTTTAGTTTCCTGCC
GAACCTCGCGACTTATTT
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACT
CAGAAATCCACCAGCCTTTCCCTCCCAAGTGCTGGGATTAAAGGCGTGCT
CCACCACCGCCCGGCTATCATCCAGTTCTAATAGGGGCTGAGAGAGGGTC
TCAAGTAGCTACCCTCAGATTTGTTATATAGACAAGATGAGCCTTGAACT
CATGGTGCTTCTGCCTCTACTCCCCAGTTGTAGGGATAGAAAATGTATGC
TACCTGGCTTGCACAGAGTTTTTCTAAAGATTGCTGTTTTTATAACATGG
GCAGTTGTTATTAATCCTANTCCAANCCCGTCCTGGAGNAAATANTTTTG
GGGTTTACCGCGGCCCCCCACAAACTGACCTTGAGGTTTTATTGGTCTTG
CTCTGAGTTGTTGAATGATATTTGATCACACTATGAACCCCAAGACTGAT
AACTGGAAAAACCTGTTTCTTGTTGTGCTGTGGCTCATCCCTAGTACACC
CTTTTAACCCTAAAGTTGCCTTCTTTTTTTTTTTCTTTTTCGAGACGGGT
TTTCCAGCTTGTTTCCTTGGCCCGCCTTGTTTTTTTCTCTTTTCCCCTAT
TTTCCCTATTTTATTTTCTTTTTCTCCCCCTTCTCTTACTCTTTACTTAC
TCCTCTTCCTTTACATTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g08.b1 MSMg01no172_g08.b1 CHROMAT_FILE:
MSMg01no172_g08.b1 PHD_FILE: MSMg01no172_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:51 2005
         (311 letters)



>mm_chr11_50869820_50870533
          Length = 714

 Score =  491 bits (254), Expect = e-143
 Identities = 294/308 (95%), Gaps = 5/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgcctcagactcctagatagctgaagtgatagactctcccaggccaggcta 64
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 511 gaattcttttgcctcagactcctagatagctgaagtggcagactctcccaggccaggcta 452

                                                                       
Query: 65  gtaggtattgtcagccacac-aaaaaaattataaatacacccagtccc--cccc-ctcca 120
           |||||||||||||| ||||| ||||||||||||||||||||||| |||  |||| |||||
Sbjct: 451 gtaggtattgtcagtcacacaaaaaaaattataaatacacccag-cccagccccactcca 393

                                                                       
Query: 121 gttttttgatgccacagagcagaaatcagtagttagggttttgattcttttatcagcact 180
           |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 392 gtttcttggtgccacagagcagaaattagtagttagggttttgattcttttatcagcact 333

                                                                       
Query: 181 tagaagccaagcttaacctgtcaccattcacatctgcgtcagctacaactgaagccacaa 240
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 332 tagaagccaagcttaacctgtcaccattcacatctgcttcagttacaactgaagccacaa 273

                                                                       
Query: 241 tgtatttgttgcagctcagtaactttcaaagctcttacctgaggcttatttacttcaagg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 272 tgtatttgttgcagctcagtaactttcaaagctcttatctgaggcttatttacttcaagg 213

                   
Query: 301 tattcaag 308
           ||||||||
Sbjct: 212 tattcaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 714
Length adjustment: 9
Effective length of query: 302
Effective length of database: 705
Effective search space:   212910
Effective search space used:   212910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)