BAC Information

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BAC

Clone NameMSMg01-172P12
Chromosome11 (Build37)
Map Location 98,864,726 - 99,014,160
singlet/doubletdoublet
Overlap geneTop2a, Igfbp4, Tns4, Ccr7
Upstream geneCacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1
Downstream geneSmarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172P12.T7 (MSMg01no172_p12.b1)MSMg01-172P12.TJ (MSMg01no172_p12.g1)
ACCAG368718AG368719
length722727
length of high quality
(start - end)		603 (40 - 642)237 (124 - 360)
definitionCHROMAT_FILE: MSMg01no172_p12.b1 PHD_FILE: MSMg01no172_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:32 2005CHROMAT_FILE: MSMg01no172_p12.g1 PHD_FILE: MSMg01no172_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:33 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(98,864,726 - 98,865,321)(99,013,925 - 99,014,160)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTC
ATAAGGATCTCATCATCTCTGTCTCCCGAGTGCTAGGATTATGATAATAA
CAGTTTTGAAATATTATCTCTTACAAAGTAATGCATACCATAGAGTTGCA
AGTGAGACTACTCTGGAGTTTGAAGACTTTGTGTAGGCCGACTCTCTCTG
CCTCTGCCAGTTTTTCTTCAGTCATCTTTATGACAAACTTCACAGTGGTA
TCTGTATGGTATTCCCTATAGTCTGTTATTAGAGAGGGTGTCTTCTCAGT
TCCATTCAACATGGTTTCTAGAACCTGTTCTTTATATGTCTAAAAAACAA
GAACAAAAACCAAAACACAATAATCCTTTGGCAAGGAGTCTCTTAAACAG
TCAATAACAAAAACAATATTTTTCTCTTGAAAAACTAAGAAGTCAATAGT
TACTTACCTGAGTCCACGTTCGGATGGGAAGCTCTGAGATTTCAATGGTT
GTAGAATCCAGAATAGCTACTTCTCCATTAATCACATACTGATTTGAAGC
CAGTTCTTCAATAGTACCTTTGAAATTCTTATAACTTGCGAGCTAAATTA
ATAACAAAAACCTTTATAAATATTTCATCTCAAATGTTATACAAACAAAC
CTAAACTCTGAAACAAATCTCGTCCTTGTGCCCTATCTTAGCGCCCAATC
TCCTCAGTTGTGCCTGACGATA

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGTCATTCTCTTGTGGCCCTCCAGA
AACCTGGCTGTGGAGAATACTCCAGCCCAGAGTAGCTAGGAATAAACGCT
CCTCTGTGTGGTATTGTCTTCCAGTCATGTGTCACTCATTGAGAACTTCT
TGAATACAGAGTCTGGTGGGGAACGTAACATGTATGTCAACACGCAACAC
CAACAGTGAGAGACACAGCACTCCTGAGGGGGCATAAGGACAAGATTCAA
AAGCAAAAAGCAAGGCTGTGAACACGTGTCCAGAAAGCATGGCAGTTGTA
TTTTGAAGGTTGTGTATAACGCCCGCCCCCCTAATAAAGAAGGGCCAGGT
TGTAGCCAGATCTTCACACTCTACAGACTTAAACCAACAAAGTAAATGAG
GCATCCGAGTGTCAGGAACGTGACTGGCACACAAGCCTGAGGAACCTGAG
CTTGTAGCCTCAGAGTTTAAAAGCTGGCTGTAGCAAGGTACACACGTAAT
ACCTAAGCCTGCTTAGGGAGGCAGGAATAATAAGATTTGCTGGCCAATCA
GTCTTCAGAATTGTTAAACTCCAGGTTCCATGAGAGACACTGAAGCCAGC
CTCTGACCTCTGTATGTGCGTACACCCCTACTTATATGAGCACTCTCCTT
GGGCTCATAGTCTGCCAGCTCTGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_p12.b1 MSMg01no172_p12.b1 CHROMAT_FILE:
MSMg01no172_p12.b1 PHD_FILE: MSMg01no172_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
         (603 letters)



>mm_chr11_98864522_98865524
          Length = 1003

 Score = 1122 bits (580), Expect = 0.0
 Identities = 592/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcataaggatctcatcatctctgtctcccgagtgctaggattatgataataacag 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcataaggatctcctcatctctgtctcccgagtgctaggattatgataataacag 264

                                                                       
Query: 65  ttttgaaatattatctcttacaaagtaatgcataccatagagttgcaagtgagactactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttgaaatattatctcttacaaagtaatgcataccatagagttgcaagtgagactactc 324

                                                                       
Query: 125 tggagtttgaagactttgtgtaggccgactctctctgcctctgccagtttttcttcagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagtttgaagactttgtgtaggccgactctctctgcctctgccagtttttcttcagtc 384

                                                                       
Query: 185 atctttatgacaaacttcacagtggtatctgtatggtattccctatagtctgttattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctttatgacaaacttcacagtggtatctgtatggtattccctatagtctgttattaga 444

                                                                       
Query: 245 gagggtgtcttctcagttccattcaacatggtttctagaacctgttctttatatgtctaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gagggtgtcttctcagttccattcaacatgggttctagaacctgttctttatatgtctaa 504

                                                                       
Query: 305 aaaacaagaacaaaaaccaaaacacaataatcctttggcaaggagtctcttaaacagtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaacaagaacaaaaaccaaaacacaataatcctttggcaaggagtctcttaaacagtca 564

                                                                       
Query: 365 ataacaaaaacaatatttttctcttgaaaaactaagaagtcaatagttacttacctgagt 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 ataacaaaaacaatatttttctcttaaaaaactaagaagtcaatagttacttacctgagt 624

                                                                       
Query: 425 ccacgttcggatgggaagctctgagatttcaatggttgtagaatccagaatagctacttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccacgttcggatgggaagctctgagatttcaatggttgtagaatccagaatagctacttc 684

                                                                       
Query: 485 tccattaatcacatactgatttgaagccagttcttcaatagtacctttgaaattcttata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccattaatcacatactgatttgaagccagttcttcaatagtacctttgaaattcttata 744

                                                                   
Query: 545 acttgcgagctaaattaataacaaaaacctttataaatatttcatctcaaatgtta 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acttgggagctaaattaataacaaaaacctttataaatatttcatctcaaatgtta 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no172_p12.g1 MSMg01no172_p12.g1 CHROMAT_FILE:
MSMg01no172_p12.g1 PHD_FILE: MSMg01no172_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:33 2005
         (237 letters)



>mm_chr11_99013725_99014361
          Length = 637

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccagagtagctaggaataaacgctcctctgtgtggtattgtcttccagtcatgtgtc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcccagagtagctaggaaaaaacgctcctctgtgtggtattgtcttccagtcatgtgtc 377

                                                                       
Query: 61  actcattgagaacttcttgaatacagagtctggtggggaacgtaacatgtatgtcaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 actcattgagaacttcttgaatacagagtctggtggggaacgtaacatgtatgtcaacac 317

                                                                       
Query: 121 gcaacaccaacagtgagagacacagcactcctgagggggcataaggacaagattcaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcaacaccaacagtgagagacacagcactcctgagggggcataaggacaagattcaaaag 257

                                                                   
Query: 181 caaaaagcaaggctgtgaacacgtgtccagaaagcatggcagttgtattttgaagg 236
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 caaaaagcaaggctgtgaacacgtgtccagaaagcatggcaattgtattttgaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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