Query= MSMg01no173_o07.b1 MSMg01no173_o07.b1 CHROMAT_FILE:
MSMg01no173_o07.b1 PHD_FILE: MSMg01no173_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:39 2005
(292 letters)
>mm_chr11_14972754_14973445
Length = 692
Score = 557 bits (288), Expect = e-163
Identities = 291/292 (99%)
Strand = Plus / Minus
Query: 1 tattactgtgcaagaatattttaagtgtctatgttgctaagattttatatgtatgatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tattactgtgcaagaatattttaagtgtctatgttgctaagattttatatgtatgatttt 433
Query: 61 ctgtcatatgtagaagatattatctcatagctaatttcttagtcctctttaaatctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgtcatatgtagaagatattatctcatagctaatttcttagtcctctttaaatctcttt 373
Query: 121 aattttttctacccacctccaacttaatcagtgtgccttatctgtaaggatgttgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aattttttctacccacctccaacttaatcagtgtgccttatctgtaaggatgttgtttta 313
Query: 181 gacacataatttaggcataggaaccaccaagtctggtgtcttctgaattttgaccagttt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gacacataattcaggcataggaaccaccaagtctggtgtcttctgaattttgaccagttt 253
Query: 241 ttgaaaacgggtagattttaaaacaaagataatatcaagtatattgagaaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttgaaaacgggtagattttaaaacaaagataatatcaagtatattgagaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no173_o07.g1 MSMg01no173_o07.g1 CHROMAT_FILE:
MSMg01no173_o07.g1 PHD_FILE: MSMg01no173_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:39 2005
(617 letters)
>mm_chr11_14852343_14853359
Length = 1017
Score = 1154 bits (597), Expect = 0.0
Identities = 612/617 (99%), Gaps = 1/617 (0%)
Strand = Plus / Plus
Query: 1 catacaatatattttgatcatatttactttaatccttccctattttttcctaaatatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaatatattttgatcatatttactttaatccttccctattttttcctaaatatatt 260
Query: 61 tctccttaactatcctccaactttacataactcaaatatttgcagttcatgtttgcattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccttaactatcctccaactttacataactcaaatatttgcagttcatgtttgcattg 320
Query: 121 cctggagcatggtcaactcatcaggagttgtatatatagtgacaacataattttcttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cctggagcatggtcaactcatcaggagttgtatatatagtgacaacataatcttcttttc 380
Query: 181 ttagaagctaccaattgtcaatagtttcttagataaggatgggatttattattttctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagaagctaccaattgtcaatagtttcttagataaggatgggatttattattttctttc 440
Query: 241 agtgtccattattgaattttgtcttgcctgatcatgtaggtgctctctcaattgctgtga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtccattattgaattttgccttgcctgatcatgtaggtgctctctcaattgctgtga 500
Query: 301 acttataggtgcaatttgtatggccccaaatccatctttacaattatctgttatctataa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 acttataggtgcaatttgtatggccccaaatccatccttacaattatctgttatctataa 560
Query: 361 ctcttaaacagtttctacatttttcttgcacagtgatacctgagagttgtgaggaaggat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ctcttaaacagtttctacatttttcttgcacagtgatacctgagagttgtgaggaaggct 620
Query: 421 ataatatatttgtcccatttaggactgaaaattctggacaaaattatggaacaacaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatatatttgtcccatttaggactgaaaattctggacaaaattatggaacaacaaaaa 680
Query: 481 tagaaatgataatgaaatttaaaagtacaacctgtcaaataaaaatctctgtcatagagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagaaatgataatgaaatttaaaagtacaacctgtcaaataaaaatctctgtcatagagt 740
Query: 541 agatagcgtggaatataggatactcaggtttcaggttaaaaatcaatgattaaggggaaa 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 agatagcgtggaatataggatactcaggtttcaggttaaaa-tcaatgattaaggggaaa 799
Query: 601 atcatcaaaacataaaa 617
|||||||||||||||||
Sbjct: 800 atcatcaaaacataaaa 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
