BAC Information

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BAC

Clone NameMSMg01-174N16
Chromosome11 (Build37)
Map Location 98,995,118 - 98,995,400
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
Downstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174N16.T7 (MSMg01no174_n16.b1)MSMg01-174N16.TJ (MSMg01no174_n16.g1)
ACCAG370029AG370030
length738745
length of high quality
(start - end)		320 (42 - 361)283 (71 - 353)
definitionCHROMAT_FILE: MSMg01no174_n16.b1 PHD_FILE: MSMg01no174_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:49 2005CHROMAT_FILE: MSMg01no174_n16.g1 PHD_FILE: MSMg01no174_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTCAAATACAGAATACATAAGTCCACAGGAAAACAAGATACCTAAAAG
GGGGCTGAAGATGGCTCAGCCCTTAAGAGCACTGACTGCTCTTTCAGCAG
TCCTGAGTTTAAAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT
AATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGATAGTGTA
CTCATATACAATAAATATCATATTTCAAAAACAACCAAACCACAAAGCAA
AACAAAACTCAAAAAACTGCAGCATTTCTAGACTGGGTGTGGTGTGTGTG
ATATAAGTATTTTCTGGCTCCCCCCCCTTTAGCTGTTACCGTAAGGAAAC
TGGTTCCTCTCGGCTCACTCAATATTTCCAATGACCTTATGCTGTGTCTG
GCACTGAGCTACTTGTTGGTGATACAGTGGTTAAATTAGGACAAAGGAGA
TAGCTTGTGGATATAAGTATAAGGGTTTACTGTATAGAACCCAAGTAAAT
ACCAGAGAGGTATGGCAGTCTACCTCTGATCCCAGTCTTGTGAAAAGAGA
TAGTCGATCTCCAGTGCCAACTGTGACACTAGCCACATTGGCCAGCTCGA
AGTTTGACTGATAGACCCTGCCTCATGAATTATGTGCAACAGTGCTTCAG
ATCATCTCTCAACGCTCAGCTGTCCTCATCCATGCTCA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACACGGGGAAGGCATAGATCACCAGGAA
GTCTGCCAGGCATCCCTGCCGATTTGCAGAGATAAAAACTGAGCCACTGA
GGGATGAAATGACCAACGAGCACCAGAGGTAGTGCCTGTGGCTTTTCAGA
TACACCACCTCTAGGATACAGTGACCAGATACAACACGGCCTGAGTTCAC
CTCCACCACCCCCACCCCCAACAACCACCACCCCCACCCCCAACCACCAC
CCCACCACCCGCACAGCTGCTTCCCATTTGAGGGGAGGAAGAGGAATAGC
AGCAGTTTTTTTTTTTCCCCGCCCCCCCCCCCCGAGGTCTGACCACCAGG
CGCCCCCTTGACTCCCATCAAACAAAAAAAAAAGAGGGAGAGAGAGAAAG
CTTTGACCACCAATCTGCATCCTGGTTTCATCATGCCTCATTTTCATGGT
GCCCTGACAAGCACTTCCTGAGTGTTAGTTTCCCTGTTTGAGCATCGAGT
GTACAACTCCTAGTAACACATGGTGCGTTAGAGAATGTAGGTTAAGACTT
TCTGCTAACTACATTCTGGATGATTCCCTGCCCTCTGGTTTACTCTTCCA
CCATTTTCCGCTTCTGTTTTCCCCCTATATTATGTTATACCTGCCCCGTT
CCTCCTGTATCCTCTCTTTCCCGTCTTTTTTGCCCTCTTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_n16.g1 MSMg01no174_n16.g1 CHROMAT_FILE:
MSMg01no174_n16.g1 PHD_FILE: MSMg01no174_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:49 2005
         (283 letters)



>mm_chr11_98995024_98995706
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacacggggaaggcatagatcaccaggaagtctgccaggcatccctgccgatttgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 377 ttacacggggaaggcatagatcaccaggaagtctgccaggcatccctgttgatttgcaga 318

                                                                       
Query: 61  gataaaaactgagccactgagggatgaaatgaccaacgagcaccagaggtagtgcctgtg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 gataaaaactgagccactgagggatgaaatgaccagcgagcaccagaggtagtgcctgtg 258

                                                                       
Query: 121 gcttttcagatacaccacctctaggatacagtgaccagatacaacacggcctgagttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcttttcagatacaccacctctaggatacagtgaccagatacaacacggcctgagttcac 198

                                                                       
Query: 181 ctccaccacccccacccccaacaaccaccacccccacccccaaccaccaccccaccaccc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctccaccacccccacccccaaccaccaccacccccacccccaaccaccaccccaccaccc 138

                                                      
Query: 241 gcacagctgcttcccatttgaggggaggaagaggaatagcagc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gcacagctgcttcccatttgaggggaggaagaggaatagcagc 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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