BAC Information

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BAC

Clone NameMSMg01-175A04
Chromosome11 (Build37)
Map Location 108,895,673 - 108,895,958
singlet/doubletsinglet
Overlap genenone
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
Downstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175A04.T7 (MSMg01no175_a04.b1)MSMg01-175A04.TJ (MSMg01no175_a04.g1)
ACCAG370136AG370137
length725729
length of high quality
(start - end)
460 (69 - 528)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no175_a04.b1 PHD_FILE: MSMg01no175_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:00 2005CHROMAT_FILE: MSMg01no175_a04.g1 PHD_FILE: MSMg01no175_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCACCCTGTCTGGTTAAGGCTTTGTGATTACTGGATGCCAATCAT
CTTCCCTCCTCTGACCACAACAACTACCGTGTTACTCTGACTATTCTTCA
TTTCATGTGTGTGAGGATGCATGTGCACCACAGGCATGCCTAGGGTCCAG
AGGTCAGAAGAGGGCATCAAATCTCCTGGGATTGGAGTTGTGAACCACTA
TGTAGATGCTGGGTAGCAATCCCAGGTCCTTAGCCACTGAGCCGCTGTCT
CTCCAGCTTCTCTATGACGATTACAAACACTTCTAAGTGGAGTTACAGAA
ACCGTATTTATCTCGTGACTAAAATGCTTGGCATGTGGTCCCTGGGACTT
CCCCATGTCACACTGACATCTCATTTTCCACTGCTGAGCAGTGTTCCATT
GTATACACATACCACATTTTCTCTATTTTGTCGTGCAACAGTGGGCATTT
AGGCTAATCCCACATCCTGGCTCTTGTAATCAGTGCAGTAAACACTGGTG
TGCAGATAACTTACTGAGATCTCAATTTTAATGCCTTTTGATAAATCTCT
AGAGGTAAATATTGCTTTATTTTTGTCTTGTTTTCCAAGTGGTTCCACAA
TTTATTTTTCTGTGTAAAGTATATTGAACTTCCAAATTTCTCGTGTACTT
ACCAATGGTTGCCCCTTTTATTTTA
ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTGGGACAGTAAAGAAAATATCAGTG
TGATTACCTCAGTGTTAGACCGGGCAACTTAAACCTAGGTAGTAATTTGG
GGGATCCAGAGGAAGTGATGCTGAATAAAGTATATGCCCCCACAATTATA
AATACATAAAACATGTATTTATACAGATGAAAAATGGAAGGGGCTGTGGA
GGAATATAAATACTGTGTATGATTGATTGGTGGGATTATGGGCATGCCCT
CTTTGATGCTTTTAAGTTGTAAGGAAATGTTTCAAAGCCCCTTTGAATCT
CTCTAATGTGGTGGTTCGCCCGNACGGCCCGGCGATTCCAGCCACAGGCC
TGGGAGGAAGGGCCCCCCGCACTGAACATGAAAACTGGCCAACTCCTCAC
ACAAAAGCCGAGGCTGCCTTACATCTGGATGGATGGCAGAACCTTTCTTT
GGAGGCTTGCCATCCCAGGCTGGTACCTCGTTCCCCAGAGCAGATGAATG
TACTATTGGGCTCCTGGGCTCTGGACCCCTGAAAACAAAGCGATGGTCTC
AGTTTTTAAACCTGGTTTAAGAATGTGACACTTGGTCTTTCTGAAAGGCG
AGAAGGTACCTGTGGCCTACACGGTAAGAAGAAGCATGGTCAGGCCTGGG
AGAATGACCCAGATCAGGATCTCGGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_a04.g1 MSMg01no175_a04.g1 CHROMAT_FILE:
MSMg01no175_a04.g1 PHD_FILE: MSMg01no175_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:00 2005
         (287 letters)



>mm_chr11_108895473_108896159
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgggacagtaaagaaaatatcagtgtgattacctcagtgttagaccgggcaacttaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 486 tgctgggacagtaaagaaaatatcagtgtgattacttcagtgttagagcgggcaacttaa 427

                                                                       
Query: 61  acctaggtagtaatttgggggatccagaggaagtgatgctgaataaagtatatgccccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acctaggtagtaatttgggggatccagaggaagtgatgctgaataaagtatatgccccca 367

                                                                       
Query: 121 caattataaatacataaaacatgtatttatacagatgaaaaatggaaggggctgtggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caattataaatacataaaacatgtatttatacagatgaaaaatggaaggggctgtggagg 307

                                                                       
Query: 181 aatataaatactgtgtatgattgattggtgggattatgggcatgccctctttgatgcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatataaatactgtgtatgattgattggtgggattatgggcatgccctctttgatgcttt 247

                                                         
Query: 241 taagttgtaaggaaatgtttcaaagcccctttgaatctctctaatg 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taagttggaaggaaatgtttcaaagcccctttgaatctctctaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)