BAC Information

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BAC

Clone NameMSMg01-175G15
Chromosome11 (Build37)
Map Location 121,287,588 - 121,287,919
singlet/doubletsinglet
Overlap geneBC032265
Upstream geneNploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b
Downstream geneFn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175G15.T7 (MSMg01no175_g15.b1)MSMg01-175G15.TJ (MSMg01no175_g15.g1)
ACCAG370411AG370412
length805723
length of high quality
(start - end)		82 (46 - 127)369 (74 - 442)
definitionCHROMAT_FILE: MSMg01no175_g15.b1 PHD_FILE: MSMg01no175_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:29 2005CHROMAT_FILE: MSMg01no175_g15.g1 PHD_FILE: MSMg01no175_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAATCTCACTCAGAAGGGAAAATAGAATGGACATTGAGAGTGG
AGGGAAGGAACTGGGAGGGGGGAGGGGGATTTCTTCTTTTCTTTTCTTCT
TCTCCTCCCTTCTCCTTCCTCTTCCTCACTTTTGCTTCTTTTCTTCTATA
CTACTTCCTCCTCTTCTCTCCTTTCTTCCTTTCCCTTTCCCCCCCTTTTG
ATTTTTTTTACCTCGATCAACGCTCTTTCAATTGCCCAGTTAAGTATGCA
CAATACACCCCCGAGTTTTTTTTTTTTTCCGCGAGGACCGGGAACAGAAA
AAGAAGGTTTAGAGTGAACCTTAAGAACCAAAGAACCGCGATGATTTTTT
TTGTTGTGTGTTGGGTGGGTGNGCCCCCCCAAAATTTTCCATTTNNAAAA
CGCGGGGGGGGGGGCGGGGGGCTACCCCTCTTTACTTTCATTCCCCTCCC
ATATATCGTTTTCGTGCCTAGTGGTGGTATGTCCCTATACCTATTATCCT
AATGAATGCATTGTATTTGGTCCCTGGCACCACGCGTAGGTGGCAGTAAC
ATCACCACCTATATTTCATAATTTACAGACCAATACCAATCTATTTATGT
CGCTTATCTTTATTATCCTACGTATTAACGTTTGCCGGGCGTTAGGGACA
TTCAATAATATTTTTTTTTATCAAGTCGCCTATGCTCGAAGGCACAGTTA
ATGCACTACATTGCCTAGTATGGTAACACCGCGTAGTGCGGTATTTTCTC
ACTAT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTGGTTGGGATTTTCTTAATTTGGG
GGAGATACATGAAGTTGGGACCATTTCAAAGCATAACAAGCTTATTTTTG
ACATTGTTATGAGTCCCTCCATCCCAGTGCATCCTCTGCAACTTGGTCCT
GCTTCTAGAATAGCTAGTGTCTTGGTTATTGAGTCTGCTAAAGCAGGCGC
TGTTCTGGGTGACGGGGTGGGGGTGTCTTGCTTATTTATGGGTGCAAGCA
TTAGAGGGTAAGGGCATATTGATTGCAAAACAACAACCCTGAGCTGCAAG
AGCAGACCCGAGGGTCTCCTAGAGCAAGGGGACAAGCTAGGCACTTTTCT
TTGTTTCTTTTCCCCCCCCAAGGGAAAGGAGGTGAACAGGCATATCGGCA
TGTGGACCAGTTTGGGTTTGATGTAGTGATATGCTGTGGATACCTCCCCC
AGGCGAGTGTCACAGAGCTCACTTCCACGATATAGTTAGACTGGCTGTTG
AGACACAGTGTGTAAACCATACTACTCCTTTTCTGTAACATTTTGTAAGT
CATTATACCCCTTTTTCCCTGACAACCCTCACCAATCTGACCCGTCTTTT
TTTTATCTTCCATCATAAATCCTATCTAAATATATTCTAGTTACGACGTT
GTTTTTCTTGCTCCGTTTAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_g15.g1 MSMg01no175_g15.g1 CHROMAT_FILE:
MSMg01no175_g15.g1 PHD_FILE: MSMg01no175_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:29 2005
         (369 letters)



>mm_chr11_121287385_121288150
          Length = 766

 Score =  563 bits (291), Expect = e-165
 Identities = 323/335 (96%), Gaps = 3/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggttgggattttcttaatttgggggagatacatgaagttgggaccatttcaaagcataa 63
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 204 tggttgggattttcttaatttgggggagacacgtgaagttgggaccatttcaaagcataa 263

                                                                       
Query: 64  caagcttatttttgacattgttatgagtccctccatcccagtgcatcctctgcaacttgg 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagcttatttttgacactgttatgagtccctccatcccagtgcatcctctgcaacttgg 323

                                                                       
Query: 124 tcctgcttctagaatagctagtgtcttggttattgagtctgctaaagcaggcgctgttct 183
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 ttctgcttctagaatagctagtgtcttggttattgagtctgctaaagcaggcactgttct 383

                                                                       
Query: 184 gggtgacggggtgggggtgtcttgcttatttatgggtgcaagcattagagggtaagggca 243
           |||||| ||||   |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 gggtgatgggg---gggtgtcttgcttatttatgggtgcaagcattagggggtaagggca 440

                                                                       
Query: 244 tattgattgcaaaacaacaaccctgagctgcaagagcagacccgagggtctcctagagca 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tattgattgcaaaacaacaaccctgagctgcaagagcggacccgagggtctcctagagca 500

                                              
Query: 304 aggggacaagctaggcacttttctttgtttctttt 338
           |||||||||||||| ||||||||||||||||||||
Sbjct: 501 aggggacaagctagtcacttttctttgtttctttt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 766
Length adjustment: 9
Effective length of query: 360
Effective length of database: 757
Effective search space:   272520
Effective search space used:   272520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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