TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCCTTCCCTAGTAGTCAAGAGTCCAGTGCTAGGAAACAAGCCTT
CCATCAACCTTGATGTGGACCAAGAGCTGATTCCTAGCCTAGGATACAGG
AAGGCATCTCCTCACAGAGTCTTGACAGTACCCAGTGGGTATAGAGCAGT
GGTTCTCAATCCAGGGGTCACACATCAGATAGCCTGCACATCCAATGTTT
GCATTATGATTCGTAAGAGTAGTAAAACGTCAGTTATGAAGTAGCAACAG
ATCATTTTCTGGTTGGGGGTTCACCACGCCATGAGGAACTGTAGTAAAAG
GGCCGGAGAATTGAGGTTGAGAACCACTGGTGTAAAGGACGATGTTTCAA
CTGATACAGGGCCGCATGCTGCCAGGAAGACTGTGTGAATGGAGCCTGGG
TAGCCAAAACCCAGTCCACATGGACTACACCAAGATGGCGCCGGTGACAT
GTAAAGGCAGGAAGACACGGGCATAAAACAACCAGAAAAATCCAGATGCT
CTTGACATATAAGCCAGTAGGAAGAGAAGAGCATTCCTGGGAGGCTGCCC
CAAATGGCCTCCAGATCGTTTGAAAAATACTGTGTTAGCGCCTTTTTTTT
TCTTCTAAAGACAAAGACTTTCACTTTCAAAGAATGTTCTTTTCAAAATA
ATCAGATTATCTAGGCCAGAGGTAAA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTCCCGGAGGATCCAGC
AATATTTCTCCTGGGCCCACATCCCGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAA
ACACATGACACTCCAGAAAAATGAAGACG

Query= MSMg01no175_o12.b1 MSMg01no175_o12.b1 CHROMAT_FILE:
MSMg01no175_o12.b1 PHD_FILE: MSMg01no175_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:05 2005
         (615 letters)



>mm_chr11_34952403_34953417
          Length = 1015

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%)
 Strand = Plus / Minus

                                                                        
Query: 108  acccagtgggtatagagcagtggttctcaatccaggggtcacacatcagatagcctgcac 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 acccagtgggtatagagcagtggttctcaatccaggggtcacacatcagatagcctgcac 956

                                                                        
Query: 168  atccaatgtttgcattatgattcgtaagagtagtaaaacgtcagttatgaagtagcaaca 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  atccaatgtttgcattatgattcgtaagagtagtaaaacgtcagttatgaagtagcaaca 896

                                                                        
Query: 228  gatcattttctggttgggggttcaccacgccatgaggaactgtagtaaaagggccggaga 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  gatcattttctggttgggggttcaccacgccatgaggaactgtagtaaaagggccggaga 836

                                                                        
Query: 288  attgaggttgagaaccactggtgtaaaggacgatgtttcaactgatacagggccgcatgc 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 835  attgaggttgagaaccactggtgtaaaggacgatgtttcaactgatacagggctggatgc 776

                                                                        
Query: 348  tgccaggaagactgtgtgaatggagcctgggtagccaaaacccagtccacatggactaca 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  tgccaggaagactgtgtgaatggagcctgggtagccaaaacccagtccacatggactaca 716

                                                                        
Query: 408  ccaagatggcgccggtgacatgtaaaggcaggaagacacgggcataaaacaaccagaaaa 467
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  ccaagatggcgccagtgacatgtaaaggcaggaagacacgggcataaaacaaccagaaaa 656

                                                                        
Query: 468  atccagatgctcttgacatataagccagtaggaagagaagagcattcctgggaggctgcc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  atccagatgctcttgacatataagccagtaggaagagaagagcattcctgggaggctgcc 596

                                                                        
Query: 528  ccaaatggcctccagatcgtttgaaaaatactgtgttagcgcctttttttttcttctaaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  ccaaatggcctccagatcgtttgaaaaatactgtgttagcgcctttttttttcttctaaa 536

                                        
Query: 588  gacaaagactttcactttcaaagaatgt 615
            ||||||||||||||||||||||||||||
Sbjct: 535  gacaaagactttcactttcaaagaatgt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)