BAC Information

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BAC

Clone NameMSMg01-176F24
Chromosome11 (Build37)
Map Location 20,776,263 - 20,776,595
singlet/doubletsinglet
Overlap geneLOC100042035
Upstream geneLOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik
Downstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176F24.T7 (MSMg01no176_f24.b1)MSMg01-176F24.TJ (MSMg01no176_f24.g1)
ACCAG371091AG371092
length1,2161,236
length of high quality
(start - end)
118 (239 - 356)333 (123 - 455)
definitionCHROMAT_FILE: MSMg01no176_f24.b1 PHD_FILE: MSMg01no176_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:03 2005CHROMAT_FILE: MSMg01no176_f24.g1 PHD_FILE: MSMg01no176_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTCAGTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTCC
TTATAATCTGATGGGACTAGGAATTGTTGACTGTGTGTGCGTGCATCACA
CTCTGAAAAATTGGCTTTGAAAAATAAAAGAAGGGAAGTTATACCCTCCA
AGGTCACCAAAAGCACACCTTGCTTTTATCTTGTTTTAGATTTTTTTGCC
AACTACTGTTAAAGGTCAGTTTGCAGCAGATCAACTCTGGCATCCAGTCA
CTTCTAGCTCATATACCATGATGGTGAGACCCCCTAACTAATACATGCAA
TGGTCCTGACCCTGTTTTACTATGGTCGCAAATGTGTTTTTTCACAAAAA
GAAAATGGTAGCCCCATGGTTGCCTGAAAGATTGGTTCATCAAGCGGACT
CTTATCCTGAGCCTTCTAGTGATTATGATACCAATGAAGAAGATGGTTCT
TTTTTTCTCCCCCCCCCCCAAGTTAACCGGACTATAAAAAAAAAAATGAA
GTGGAGAACGAGTACTTACTATCAATTCTCAAAGCCACCCCCCCCCATAT
ACCTGGTGGCCAGATTTTGTGCTTAATCTTTGTCGATTGGCAGCTGAATT
GGACACCTGGGACATCCCTACCGACAACTTTAATTTCTAATTATTATTCT
GATTCGCTGAACTTTTGGACTTTTTATCTTAAACAGATTGGCTGCCTTCA
TACAGGATCACTTTCAGTAAGCTCAGTCATTCACCATGCCGTTTGTTCAT
GGCTATGAACAAATGCATTGCGTGCATATTCACATGTCCCTTGCGACTTT
GGACTGAATGTCACAGAGTGCGCTATACAGGGCCGTAAGTCAGAAACCGG
TAAGAGTGTTCCTGCATTTCCTATTGGACTACCACCGAAACTAACTTTAC
AAAGTTATGCCTGAACTTCTCGATGGGCATGAAGGATCTATATATACCCC
TGACCTAAAGCAGGTCCCTGTAACCTAATCCACCCTATTTCCTAAATGTG
CTTAAGGAAAAAAAATAACTCTTGCTTCCCCCCTCCCCTCTTTTTTTTTA
CAAACCAATAATGGGTAATTTGGTCCTTTCCCCCCCCCTTTAAAAGTTTT
AACCCCCATTTTTTTTAAAGCTTTTTATATACTCAACTTTCTGTACAACC
ACATGGGAAATCTTCTTACCTATGCACCCCCCCTATATTCTCCAAACAAA
AAACTCTTCTCTTTTA
CCCCAACCACGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTAAATCCCCCCACTGAGTCCTCTGAGGGGN
TGGNACTACTTTTATCTCCTATGTCTGGNTTTAGTTTGCAACTTAAAGGG
AAATGCAATGGGCTCACAATTGCCAACAGCATAGGACTCAGCACCTGATA
TCAGTACTTACCACTGCCCGGCCTGGCAAATTTTTCTTAAATAATCACAG
AAGAGGGCGAAATTAGTACAATTAAAATCTGACTACTAAGCCAAGCCATT
AAGAGGGGTACAGTGTTACAGAGTAGAAAGGGCTCACTGGATGCATGTGA
CAGAAGACTCATAACTGTAATGTCTGAGGACCTCATGGCAATCAGCTTCT
TATCTGCAACAAATAAGGATTTAAATGGGCAGCAGATTTGAACAGGTAGT
TCAGATAAATGAATGGAAAATAAAGATATGACTATATGCCTGGTATCTAT
GACCATCAAGAGAATGTGCATTAAAATCACACGGAATACCATTCCAAACC
CACACTTAATTGCTAAATTGAAAGCCTTATATCTGGGTCACCCATACCTC
TCCACATTTCTGGTTGTACACATGGTATTGCCACCTTGGGGAAACTTTTG
ATCATTTTTATAAACTTAAACAAGGCCTACTCAATGAGCCACTAAGTCTA
CTCATGGGTATTTACCCAAGGAAAATGAACGTATATATCCTAAAAGGAAC
GGGGTGACCAATTTCATGGAAACTTTATTTAAAACAGCAATCAAACTTAA
ATAACTTAGATGCCAATCAACAAGATGGATCACCAACCCTGGAGTAGCCA
TACAGAAAGACCCTGCTTGCCATCTCCATCACAGCACATACATTCACGTT
GGATTTTATTTCATGCCCATCTGGCCGTCTTCAAATATCCCCATTCCTTG
TTTACCGGTTTCACCCAGGGCTCTGTCCCTTGCCCTGCCTTGGCCTCCGG
GAACCAAAAAGGTTTACTAAACCAACGGGAACTTGCCAAGCACAAAAAAA
AAACTATTTACCTATTTAATCTAATTACCATTCTTAAAACCTTGAACAGT
ATTTTTCTCCATAAGCCCCCCCCCCTCCCCGCCTCTCGTTATTTGTCTTT
GCCCCCCAACACTTTTCATCCATCTCTCTTCCTTCCTTCTCTCTTCCTTC
CTCTCCCCACTACTTCTTCCCTCACTCACCTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_f24.g1 MSMg01no176_f24.g1 CHROMAT_FILE:
MSMg01no176_f24.g1 PHD_FILE: MSMg01no176_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:03 2005
         (333 letters)



>mm_chr11_20776063_20776795
          Length = 733

 Score =  615 bits (318), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctggntttagtttgcaacttaaagggaaatgcaatgggctcacaattgccaacagcat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctggctttagtttgcaacttaaagggaaatgcaatgggctcacaattgccaacagcat 260

                                                                       
Query: 61  aggactcagcacctgatatcagtacttaccactgcccggcctggcaaatttttcttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggactcagcacctgatatcagtacttaccactgcccggcctggcaaatttttcttaaat 320

                                                                       
Query: 121 aatcacagaagagggcgaaattagtacaattaaaatctgactactaagccaagccattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcacagaagagggcgaaattagtacaattaaaatctgactactaagccaagccattaa 380

                                                                       
Query: 181 gaggggtacagtgttacagagtagaaagggctcactggatgcatgtgacagaagactcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggggtacagtgttacagagtagaaagggctcactggatgcatgtgacagaagactcat 440

                                                                       
Query: 241 aactgtaatgtctgaggacctcatggcaatcagcttcttatctgcaacaaataaggattt 300
           |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||
Sbjct: 441 aactgtaatgtctgaggacctcatggcaatcagcttcagaactgcaacaaataaggattt 500

                                            
Query: 301 aaatgggcagcagatttgaacaggtagttcaga 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgggcagcagatttgaacaggtagttcaga 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)