Query= MSMg01no178_c11.b1 MSMg01no178_c11.b1 CHROMAT_FILE:
MSMg01no178_c11.b1 PHD_FILE: MSMg01no178_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:52 2005
(371 letters)
>mm_chr11_115562838_115563608
Length = 771
Score = 640 bits (331), Expect = 0.0
Identities = 362/385 (94%), Gaps = 21/385 (5%)
Strand = Plus / Minus
Query: 4 ggaattccaatcttccattaaagatggcaacaaaaatcctaatgctatacacattttgtt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaattccaatcttccattaaagatggcaacaaaaatcctaatgctatacacattttgtt 684
Query: 64 tttctttttggtttttcgagacggggtttctctctgtagctcttgctgtccttgaattta 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttctttttggtttttcgagac-gggtttctctctgtagctcttgctgtccttgaattta 625
Query: 124 ctctgtgtacaacattattaaaggaagaatctgaaggtaaacatgtgtacagtgattctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctctgtgtacaacattattaaaggaagaatctgaaggtaaacatgtgtacagtgattctc 565
Query: 184 tctctctctctgtgtctctgtctctctctcacacacaccccccgtctggtggctgagcta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctctctctctgtgtctctgtctctctctcacacacaccccccgtctggtggctgagcta 505
Query: 244 gggcaccacttttccactgacaatcactctagctgtgctcctcaggaagatgaagtgaca 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggcaccactttcccactgacaatcactctagctgtgctcctcaggaagatgaagtgaca 445
Query: 304 gagcacactaacggtacccagtgagaacacc--------------------gctctagag 343
||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 444 gagcacactaacggtactcagtgagaacacctctgagccatgtagcacaccgctctagag 385
Query: 344 cccatcacatatgtaaagtctaaga 368
|||||||||||||||||||||||||
Sbjct: 384 cccatcacatatgtaaagtctaaga 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_c11.g1 MSMg01no178_c11.g1 CHROMAT_FILE:
MSMg01no178_c11.g1 PHD_FILE: MSMg01no178_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:53 2005
(283 letters)
>mm_chr11_115414961_115415643
Length = 683
Score = 240 bits (124), Expect = 8e-68
Identities = 244/298 (81%), Gaps = 36/298 (12%)
Strand = Plus / Plus
Query: 1 tgaggtagaggatctgggtctgagaccaataggagctatgtagtcaatctggggtatata 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggtagaggatctgggtctgagagcaataggagctatgtagtcaatctggggtatata 260
Query: 61 gaaaggacctggctctctaaattcatatatatgtatatatatgaattcatgtatgtatat 120
|||||||||||||||||||||||||||||||| ||||||||| || || ||| |||||
Sbjct: 261 gaaaggacctggctctctaaattcatatatatatatatatat--at--atatatatatat 316
Query: 121 atatatatacatatatatatata------cacacactgtatatacatgcatacatacac- 173
||||||||| ||||||||||||| || | | | |||||| || ||| ||||||
Sbjct: 317 atatatatatatatatatatatatgaattcatata-tatatatatat--atatatacacg 373
Query: 174 ---atatacatacctgcatgcatacata-tgcccaca----acatacatgcatatataca 225
||||||||| | || ||||| | ||| ||| | ||||||||||| || ||
Sbjct: 374 tatatatacata--t--at--atacacactgcatacactgcatatacatgcatacatgca 427
Query: 226 tatatacacagatacatgcatacatgcctgcatgcatacatacacacatgcaacatac 283
|| |||||||||||||||| | ||| |||||||||||||||| |||| ||||||
Sbjct: 428 tacatacacagatacatgc---c-tgcatgcatgcatacataca-acat---acatac 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
