Query= MSMg01no179_m22.b1 MSMg01no179_m22.b1 CHROMAT_FILE:
MSMg01no179_m22.b1 PHD_FILE: MSMg01no179_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:54 2005
(557 letters)
>mm_chr11_80948543_80949499
Length = 957
Score = 1011 bits (523), Expect = 0.0
Identities = 546/555 (98%), Gaps = 4/555 (0%)
Strand = Plus / Plus
Query: 5 gaattcttagggttgtcc--ttttcccatttgaaaggagaagctgcctagagacgtaagg 62
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcttagggttg--catttttcccatttgaaaggagaagctgcctagagacttaagg 262
Query: 63 ctccgtcccattagcattctagggggtcagtgtttccaggctgctcgggccacgttgttc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctccgtcccattagcattctagggggtcagtgtttccaggctgctcgggccacgttgttc 322
Query: 123 ctgcacactgtgtgggtgagggaggcagttccacttcagaaggagccagatgtacccaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgcacactgtgtgggtgagggaggcagttccacttcagaaggagccagatgtacccaca 382
Query: 183 gcacaaagaacaagggctggagctgtggaagctgaattttctatgttggaaggaaggagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcacaaagaacaagggctggagctgtggaagctgaattttctatgttggaaggaaggagg 442
Query: 243 cagatgcttctcccatgctggctttgctttgccagccccatgatgaatggaatccttccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagatgcttctcccatgctggctttgctttgccagccccatgatgaatggaatccttccc 502
Query: 303 catccctgggtggcctcctcttcttgccttccaggtctccacacagcaacccttccctca 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 catccctgggtggcctcctcttctcgccttccaggtctccacacagcaacccttccctca 562
Query: 363 ggtaccaatcccaccctgctccttgtctttaaatgcctctcactgacccaccgagatatc 422
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 ggtaccaatcccaccctgctccttgtctttaaacgcctctcactgacccaccgagatatt 622
Query: 423 cctggctcttaaatctttccccagtatttggggttatcgatttgtttgctagtgatgtta 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctggctcttaaatctttccccagtatttggggttatcgatttgtttgctagtgatgtta 682
Query: 483 atggcacaactgtctctcatcctacaatctttccttaaaatcttctatcctatgtatgtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atggcacaactgtctctcatcctacaatctttccttaaaatcttctatcctatgtatgtt 742
Query: 543 aaaaatacatcactg 557
|||||||||||||||
Sbjct: 743 aaaaatacatcactg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_m22.g1 MSMg01no179_m22.g1 CHROMAT_FILE:
MSMg01no179_m22.g1 PHD_FILE: MSMg01no179_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:54 2005
(636 letters)
>mm_chr11_81117951_81118986
Length = 1036
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%)
Strand = Plus / Minus
Query: 117 gtgcggtcacacccgtatcatttcaccaatgaattctattatattttaagagctgacatc 176
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1036 gtgcggtcacacctgtatcatttcaccaatgaattctattatattttaagaactgacatc 977
Query: 177 actcttagataaagaaaaagtgaacatttattgagatcagtaatctaaaatcaaaattga 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 976 actcttagataaagaaaaagtgaacatttattgagatcagtaatctaaaatcaaaaatga 917
Query: 237 agatatcacaagacaggaaaattaaggtccacccaccatacttaataatttagctgtaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 agatatcacaagacaggaaaattaaggtccacccaccatacttaataatttagctgtaaa 857
Query: 297 atttgttgaaatgttagcaaactgaaaacatcagtaggtggcgaattctatcccttaatg 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 856 atttgttgaaatgttagcaaactgaaaacatcagtaggtggcaaattctatcccttaatg 797
Query: 357 aagttggatctatgccaagtatgcaagacagattaagtcatataatgactggaccaaaaa 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagttggatctatgccaggtatgcaagacagattaagtcatataatgactggaccaaaaa 737
Query: 417 aatgaagaagaaaatctataatgaggataggaaaacaatcccataacaacctatgcagtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatgaagaagaaaatctataatgaggataggaaaacaatcccataacaacctatgcagtt 677
Query: 477 catggggaaagttttaatatgaacaaatgacaagagagaacatcttcaggtggataaaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 catggggaaagttttaatatgaacaaatgacaagagagaacatcttcaggtggataaaag 617
Query: 537 gcatttgtgaaagacttatagtttgtgggctggagagatggctcaccattaaggaaagca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcatttgtgaaagacttatagtttgtgggctggagagatggctcaccattaaggaaagca 557
Query: 597 ctgctttctcttgcagaggtttggttgccagaatgcatg 635
|||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctgctttctcttgcagaggtttggttgccagaatgcatg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
