Query= MSMg01no180_b18.b1 MSMg01no180_b18.b1 CHROMAT_FILE:
MSMg01no180_b18.b1 PHD_FILE: MSMg01no180_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:16 2005
(311 letters)
>mm_chr11_87084364_87085072
Length = 709
Score = 543 bits (281), Expect = e-159
Identities = 300/307 (97%), Gaps = 4/307 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcctggtcaaatagttcagtttttgaaggaactattttt-aaataagccttaa 62
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 507 ggaattctcctggttaaatagttcagtttttgaaggaactatttttaaaataagccttaa 448
Query: 63 atatacatttggcgcaaaaaaaaaacccaacctccaatacagttggcagcttgagaaaag 122
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atataca--agg-ggaaaaaaaaaacccaacctccaatacagttggcagcttgagaaaag 391
Query: 123 cttaattaccctccttctctgtaaccatccagagaaagcaaccctgtaaccagcagagta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttaattaccctccttctctgtaaccatccagagaaagcaaccctgtaaccagcagagta 331
Query: 183 ctcattacctgctgggagccagccaagtggagtccccactgctaagttcagaaaataaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctcattacctgctgggagccagccaagtggagtccccactgctaagttcagaaaataaac 271
Query: 243 aagaagaaaagaaagagagaaagacaaaggcatgtggatggagggaataatgaggtccag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagaagaaaagaaagagagaaagacaaaggcatgtggatggagggaataatgaggtccag 211
Query: 303 aagcagg 309
|||||||
Sbjct: 210 aagcagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 709
Length adjustment: 9
Effective length of query: 302
Effective length of database: 700
Effective search space: 211400
Effective search space used: 211400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_b18.g1 MSMg01no180_b18.g1 CHROMAT_FILE:
MSMg01no180_b18.g1 PHD_FILE: MSMg01no180_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:16 2005
(282 letters)
>mm_chr11_86954882_86955563
Length = 682
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%)
Strand = Plus / Plus
Query: 1 aaatccagtgcccctggcctccaagggcatacccacaggcaggcacctgtacacaaaatt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aaatccagtgcccctggcctccaagggcatacccacaggcaggcacatgtacacaaaatt 260
Query: 61 taaagcaataaaacataatgaatctttttttcaaaaggaaaaggaaacaggaccacagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagcaataaaacataatgaatctttttttcaaaaggaaaaggaaacaggaccacagaa 320
Query: 121 atgggaggagctaaattttacttgtttttggttttcttgatacaggcttttgctgtgtat 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggaggagctaaactttacttgtttttggttttcttgatacaggcttttgctgtgtat 380
Query: 181 ctcagattgaccttgaagtcactttgtagtttagccatccttatgcctgagtctcctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagattgaccttgaagtcactttgtagtttagccatccttatgcctgagtctcctaag 440
Query: 241 tatagagattacaggtttgtgccagagcttagttgatgcctg 282
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tatagagattagaggtttgtgccagagcttagttgatgcctg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
