BAC Information

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BAC

Clone NameMSMg01-180C24
Chromosome11 (Build37)
Map Location 42,576,897 - 42,698,437
singlet/doubletdoublet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180C24.T7 (MSMg01no180_c24.b1)MSMg01-180C24.TJ (MSMg01no180_c24.g1)
ACCAG373739AG373740
length720718
length of high quality
(start - end)		324 (386 - 709)551 (129 - 679)
definitionCHROMAT_FILE: MSMg01no180_c24.b1 PHD_FILE: MSMg01no180_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:22 2005CHROMAT_FILE: MSMg01no180_c24.g1 PHD_FILE: MSMg01no180_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,576,897 - 42,577,220)(42,697,887 - 42,698,437)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTGAGGAATACTGAATGACTGAGAAGCATCTAAAAAAATGTTC
AACATCCTTAATCATCGGTTAAACCCAAATCAAAACAACCCTGAGATTCT
ACCTCAGGCCAATCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAAA
TGCTGTTGAGGATGTGGAGGAAGAGGAACACTTCTGCATTGCTGGTGGGA
TTGCAATCTTGTACAACCACTCTGGAAATTAGTCTCGCATTTCTTCAGAA
AATTGGACATAGTACTACCAGAGGATCCACCAATACCACTCCTGGGCATA
TACCTACCCAGAAGATGTTCCAACACTTAACCACCGACACAAGCTCCACT
TTGTTCATAGCAGCCCTATGTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGTCCCTCAACAGAGGAATGGATACAGAAATTGTAGGCACTTTCATGGC
ACATCATTTGCTCTGGAAAACAGTAATATTTGAACAACCATGTACATTCT
TATTTCCATATATCAATATTAAAAGCAAAACAAAGCATTGTTTCTGAATC
TGTTGCTGGGAGAATTGTATTGTGATTCTTCAGTTCTAGAGAAGCATTCA
TCTAGAGTCGTTGTGTATTCTCCGCTAAAGATCCATACACCATTGAGGGT
GCTCACCCTTCTTCTGGTGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTATCTGTGCAGCTAGAAATATATAATT
GAAGTATAATGGCCCAGATTTTGCCATTAGGACTCACTCAGAGACATGTG
CTTGGGAGGTTTGGCAAGCTCACATTGCATTGCATACTCAGAGCAGAGTT
GACACACATCTGTCTGGGTCACTGATATTAGCACTAAGAGTGTTACTACC
CTCTAGGATGCTTTAGAAGATTCTGTGCACAAGCAAGCCATCTGCCTTCC
AAACTGGGCTAGTCTCAACAAGTATATCTCTTTAAATGAGAGAGCAATTT
CCTGTGGATCAGCTAATGTCTTTATCTCATCCCATGCCTAATGGTGGTGA
CTTCTTAATGCCTTCTTATTTCATCAAAATGATGTCTTGGCTTTTCTCAC
AGTCAAGTCTGCTTTGTTCTTCTACAATATGTACTTGGCACTGAGCTGTA
AATACACAGCCTCTAAATCATGAAAATAGCTGGCATATCATATAACAGAA
AGTGGTGTTTTCAGCTCAAATAACACACATAGTTCTTAAGGAAAATCGAG
AGAGGTCTAGGGACTAATAATTCTAGGTTGTCAGGCATTAACATTTAAAA
TCATCTGCTATTAGTTAGAACTATCTCCCAAGAGGAATATATCTTGTTGC
CCCCGCCTAAGTCTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_c24.b1 MSMg01no180_c24.b1 CHROMAT_FILE:
MSMg01no180_c24.b1 PHD_FILE: MSMg01no180_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:22 2005
         (324 letters)



>mm_chr11_42576697_42577420
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacacaagctccactttgttcatagcagccctatgtataatagccagaagctggaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacacaagctccactttgttcatagcagccctatgtataatagccagaagctggaaagaa 260

                                                                       
Query: 61  cccagatgtccctcaacagaggaatggatacagaaattgtaggcactttcatggcacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagatgtccctcaacagaggaatggatacagaaattgtaggcactttcatggcacatc 320

                                                                       
Query: 121 atttgctctggaaaacagtaatatttgaacaaccatgtacattcttatttccatatatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgctctggaaaacagtaatatttgaacaaccatgtacattcttatttccatatatca 380

                                                                       
Query: 181 atattaaaagcaaaacaaagcattgtttctgaatctgttgctgggagaattgtattgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattaaaagcaaaacaaagcattgtttctgaatctgttgctgggagaattgtattgtga 440

                                                                       
Query: 241 ttcttcagttctagagaagcattcatctagagtcgttgtgtattctccgctaaagatcca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttcttcagttctagagaagcattcatctagagtcgttgtgtattctcccctaaagatcca 500

                                   
Query: 301 tacaccattgagggtgctcaccct 324
           ||||||||||||||||||||||||
Sbjct: 501 tacaccattgagggtgctcaccct 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_c24.g1 MSMg01no180_c24.g1 CHROMAT_FILE:
MSMg01no180_c24.g1 PHD_FILE: MSMg01no180_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:22 2005
         (551 letters)



>mm_chr11_42697687_42698637
          Length = 951

 Score = 1011 bits (523), Expect = 0.0
 Identities = 544/551 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggactcactcagagacatgtgcttgggaggtttggcaagctcacattgcattgcatact 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 751 aggactcactcagagacatgtgcttgggaggtttggcaaactcacattgcattgcatact 692

                                                                       
Query: 61  cagagcagagttgacacacatctgtctgggtcactgatattagcactaagagtgttacta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 691 cagagcagagttgacacacatctgtctgggtcactgatattagcactaagagtgttacca 632

                                                                       
Query: 121 ccctctaggatgctttagaagattctgtgcacaagcaagccatctgccttccaaactggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ccctctaggatgctttagaagattctgtgcacaagcaagccatctgccttccaaactggg 572

                                                                       
Query: 181 ctagtctcaacaagtatatctctttaaatgagagagcaatttcctgtggatcagctaatg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 571 ctagtctcaacaagtatatctctttaaatgagggagcaatttcctgtggatcagctaatg 512

                                                                       
Query: 241 tctttatctcatcccatgcctaatggtggtgacttcttaatgccttcttatttcatcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tctttatctcatcccatgcctaatggtggtgacttcttaatgccttcttatttcatcaaa 452

                                                                       
Query: 301 atgatgtcttggcttttctcacagtcaagtctgctttgttcttctacaatatgtacttgg 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atgatatcttggcttttctcacagtcaagtctgctttgttcttctacaatatgtacttgg 392

                                                                       
Query: 361 cactgagctgtaaatacacagcctctaaatcatgaaaatagctggcatatcatataacag 420
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 391 cattgagctgtaaatacacagcctctaaatcatgaaaatagctggcatatcacataatag 332

                                                                       
Query: 421 aaagtggtgttttcagctcaaataacacacatagttcttaaggaaaatcgagagaggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaagtggtgttttcagctcaaataacacacatagttcttaaggaaaatcgagagaggtct 272

                                                                       
Query: 481 agggactaataattctaggttgtcaggcattaacatttaaaatcatctgctattagttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agggactaataattctaggttgtcaggcattaacatttaaaatcatctgctattagttag 212

                      
Query: 541 aactatctccc 551
           |||||||||||
Sbjct: 211 aactatctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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