BAC Information

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BAC

Clone NameMSMg01-181F08
Chromosome11 (Build37)
Map Location 18,249,732 - 18,249,899
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665748, Etaa1, LOC327871, LOC627696, LOC627716
Downstream geneLOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181F08.T7 (MSMg01no181_f08.b1)MSMg01-181F08.TJ (MSMg01no181_f08.g1)
ACCAG374540AG374541
length767754
length of high quality
(start - end)
60 (75 - 134)168 (152 - 319)
definitionCHROMAT_FILE: MSMg01no181_f08.b1 PHD_FILE: MSMg01no181_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:46 2005CHROMAT_FILE: MSMg01no181_f08.g1 PHD_FILE: MSMg01no181_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTCTTGTGGTTGTCTTCTTTTAGT
TTTGTTGAGGGATTATCTTCTCGTTTTTTCTAGGGCGTGGTTCCCGTCCT
TGTATTGCTGTTTTTCTGCTATTATCCCTCGACCGGATGGATGCGTGCAG
AGATAATGCACGAATTTAGTCGTCTGAGGTTGCAAGCTTCATGAAACCAT
CTGCCTTTCTTGGAAGTTGCTGTCCCAGCTCTGCCTCCAGAAATTTGCTC
ATCGTCATGTCCACGTTATTTCTTTTTTTTTTTTCAATGTGAAAGCCCCA
ATAGCATTTCTTTTTTTTTTCCCCCACCCCCACCTTTTATATTTTTCCGC
CCTTCTCCCTCCCTTTTTTTCCCCCCTTTTACCAAATTTTATTCTCCTCG
TTTTTTTTTTTCCCCCCCCCTTTTTTTTGCTCTTTATTTAAACATTTTTG
CATTTGCCTTTAAAATAAGTATCCCTCGCATTTTTTTCCCCTTTTACCAC
CTTTCTTTTCCCACCCCCCCCCTTTCTTTTTTTTTCCCTTTTTTTTTTCC
CCCCCCCCCTCTCCTCACTCTCTCTTTTTTTTTCCCCCCCCCCCCCCCCC
CTTTTTTTTTTTTTATATTTTTTCGTCCCCCCTCATTTTTTTTTCATTTA
TTTTCCACCCCCCCCCCCCCCCCCCTTTTTGTCCAACCTTATATATTCAT
TACGCCACTTAAATCTG
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGATCCTTGAAGGAATTCAGTCTCTTCTTTTTCTAGGAAGCTGA
GCAGTCAGACTGGCCATTAGACCCTACTGATAAAAGATGAAGTTACATGG
AAGTAGGTCTTCTCTGATGAGTCCTGGGCAGTGTGACACTATTGGTTGAA
TTATAGAATTTTTGGCTAGCTCTTTTTGCTAATAAACAAACACAGTAAGG
ACTTCTACCGGACATCCTGGTGATACCTAATTTACATAGCAATTCAAGAC
CTGCCCTTATCCTTGGTCATGATTGTATCAAGCAAAGGTATGAGTTTGAA
ACCTGAATTATTTTATTTTCCCCCCCCCCCCCCTATAGGATGCTCAAGTA
TGGATTAGTAGTCTACCCACATGTAATATAAAATACTCAGTGTCATTCAA
GCCACACAGGGATCCTTGGTGACCACAAGACCTACTTGTTTTTTTGGGCC
AAAATTCCACACTTTTACCGATTGTGTCCATTTTCTAGCTGCCGCTCGTA
CATCTTATCCCTTGCACTACGCTTATTTTTCTACCACTCTTTCCCTTTAT
AACACTTTTTTCTATTTTCTACTTGTTATTTTTTTTATTACACTACTATA
ATTTATATTTTCACCCCCGGCACAAGATTTTTATATTTATTTTTTTTCCC
CCCATCAATATTTTATTCTCTCCCCCACATAACTCATTATCTTCACTTAT
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_f08.g1 MSMg01no181_f08.g1 CHROMAT_FILE:
MSMg01no181_f08.g1 PHD_FILE: MSMg01no181_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:47 2005
         (168 letters)



>mm_chr11_18249532_18250099
          Length = 568

 Score =  317 bits (164), Expect = 2e-91
 Identities = 167/168 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaggtcttctctgatgagtcctgggcagtgtgacactattggttgaattatagaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaggtcttctctgatgagtcctgggcagtgtgacactattggttgaattatagaattt 260

                                                                       
Query: 61  ttggctagctctttttgctaataaacaaacacagtaaggacttctaccggacatcctggt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggctagttctttttgctaataaacaaacacagtaaggacttctaccggacatcctggt 320

                                                           
Query: 121 gatacctaatttacatagcaattcaagacctgcccttatccttggtca 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatacctaatttacatagcaattcaagacctgcccttatccttggtca 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)