BAC Information

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BAC

Clone NameMSMg01-182K01
Chromosome11 (Build37)
Map Location 73,025,940 - 73,026,123
singlet/doubletsinglet
Overlap geneCarkl
Upstream geneMed31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns
Downstream geneTrpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182K01.T7 (MSMg01no182_k01.b1)MSMg01-182K01.TJ (MSMg01no182_k01.g1)
ACCAG375454AG375455
length737736
length of high quality
(start - end)
278 (46 - 323)188 (84 - 271)
definitionCHROMAT_FILE: MSMg01no182_k01.b1 PHD_FILE: MSMg01no182_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:25 2005CHROMAT_FILE: MSMg01no182_k01.g1 PHD_FILE: MSMg01no182_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGCACACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAATATCACAAATTCAGGTGACAGCA
GATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AACATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCTACCTGGCAAGAAGGATACATGCTCCACTATG
TTCATATTATTCTTATTCCCCCCCACCCAGAATCTGTATAGAACCCAGAT
GTTTCTCACCAGAGGAACGGATACAGAAAATGCGGCACATCTACTCAATG
TATTACCACTCATTTATCAACCCCAATGAATTTATGAAACTCCTAGCCAA
ATGGACGGACCTTTCAGCTTTTTCTTTTCTGCACGACCTCCTTTTTCTCC
CTTTGCACCCCCCTCAATTTGTATTATTTGATATTTGCACTTTAGCCCTT
TACCCACCTATATTCTTTTTAACCCTACATTAATCTGTTTAACCCCCCAT
AATCCCCTTCAACCTTTTATATACTGATTTCGTCCCC
CCCCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGGATGTAAGAAGA
GATGGATGAGATAAGCTTGGCCAGACCTCTTAAACAAACCCGTGACCTTG
GGCTTGGGAATGTGGCTCAGCTGTAGAACATGCGTTCAGTGTTCAACAGG
CCCTGGGTGCCACCCGTAGTATAACAGCAGTCAGTTGGCACAGGACAAAA
GGAAAGAGAAGATGTCTTGGTGATCCCTCTGATATCACCTCTTTTGTCAT
GAGGTTGGAAGGACACAAAGAGCAGGGGACTCTGAAATTGTGAAACCCAT
CATCTCTTATGGGGGTGGATGGGTACAGTGTCAAGTTAGAAAGAATATTA
CAAACCGCCAACCAAAAATTAAACCCCCTTGAGAAGCTTTCCTTTCCCCA
ATTTTTGGACCAGAAATAAAACACCTGTTGCTTTTTGGTTACTTAAACGC
AAAAAAAATCCAAATCACCCCCCCCCGGTCTATACCAACCTTACATGTAA
TAACTAAACACCCCCCTTCTCTTCTCTTACTCTGTTTTGTCTCACGATTA
CTTTTATTCCCCTCCATTTCTTTTTAATATATATCGTATCAGCCCTCAAC
AACTATCAAAAAAGCACCGCTCCCCCTAGTCCCCACTCAACCCCCCGCGT
CGTAAAAAAACATTACCCACTATTTCTTTCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_k01.g1 MSMg01no182_k01.g1 CHROMAT_FILE:
MSMg01no182_k01.g1 PHD_FILE: MSMg01no182_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:25 2005
         (188 letters)



>mm_chr11_73025736_73026323
          Length = 588

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggatgtaagaagagatggatgagataagcttggccagacctcttaaacaaacccgtgacc 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggatgttagaagagatggatgagataagcttggccagacctcttaaacaaacccgtgacc 264

                                                                       
Query: 65  ttgggcttgggaatgtggctcagctgtagaacatgcgttcagtgttcaacaggccctggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggcttgggaatgtggctcagctgtagaacatgcgttcagtgttcaacaggccctggg 324

                                                                       
Query: 125 tgccacccgtagtataacagcagtcagttggcacaggacaaaaggaaagagaagatgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccacccgtagtataacagcagtcagttggcacaggacaaaaggaaagagaagatgtct 384

               
Query: 185 tggt 188
           ||||
Sbjct: 385 tggt 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)