BAC Information

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BAC

Clone NameMSMg01-184E09
Chromosome11 (Build37)
Map Location 8,703,327 - 8,703,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665380, Tns3
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184E09.T7 (MSMg01no184_e09.b1)MSMg01-184E09.TJ (MSMg01no184_e09.g1)
ACCAG376608AG376609
length1,202689
length of high quality
(start - end)
430 (28 - 457)281 (56 - 336)
definitionCHROMAT_FILE: MSMg01no184_e09.b1 PHD_FILE: MSMg01no184_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:34 2005CHROMAT_FILE: MSMg01no184_e09.g1 PHD_FILE: MSMg01no184_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCATTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATTGTTTTTAATTGCTGAGTAGTACTTCATTGTATAAATGTACCACATTT
TCTATATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCTAGCTTCTG
CCTATTATAAATAAGGCTTCTATAAACATAGTGGAGTATGTGTCCTTATT
ACATGTTGGAACATCTTCTAGGTATATACCAAGGAGAGGAATTGCTGGGT
CCTCAGGTACTACTATGTCCAATTTTCTGAGAAAAAAAAAAACCGAACTG
ATTTCCAGAATGGCTGTACCAGCTTGCAATCCAACCAGCAATGGAGAAAT
GTTCTTCTTTCTCTACATCCTTGCCAGTATCTGCTGTCACCTGAGTTTTT
GATCTTAGCCATTCTGACTTGTTTCCCTGATGACTAAGGATGTTGAACAT
TTTTTTACCCCCCCCCAGCCATTCATTATTCCTCAGAAGAAAATTCTTTG
TTTAGCTCTGTACTCCATTTTAAATAGGGTTATTTGGTTCTCTGGAGTCT
AACTTCTTAGTTCTTTTTATATATTGGATATTAGCACTCTATCAGATGTA
GTATTGATAAAGATCTTCCCCAACCTGTTGGTTGCCATTTTATCCTATTG
ACAGAGTCCTTTTCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTCAATTCTTGATCTTAGAGCATAAGCTATTGGTTCTGGAAATTTTCCCC
TGTGCCCATGTGCACAAGGCTCTTCCCCACTTTGTTTTCTATTAATTACA
GTGTATCTGGTTTTATTTGTATGTCTTTGATCCTTTTGTTTTTTTACCTT
TTGTCTTTTATTTTTAATTTAATTTATTTCCTATTCTTTTTTTTTTATTT
TCTATTTATTCTTTTACTTTCTTTTATCTATTTTTTATATTCCTTTATCT
TTCTATTTATTCTCTTTCTTTCAATTTTCTTCTCTCTTATTTTATTTTTT
TCTCTTCTTTATTTTTCTCTTTTTCTTTCTTTTTCTTCTCTTTTTTTTTT
GCTTCTCTTTTCTTATTTTCTTTCTTTTTTATTTTATTACTTTATTCTCT
TTTTATTCATTTTATCTTCTTTTTTTTCTTCTTTCTTTTCTCATTCTTCA
TACTCTTTATTTATCCCCTTTCTACACTTTTCCTTTTCTTTTTTATTCTT
TT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTTTAGTTCCCGGCAGACGTTTCTCTGGGAATTATAAAGATGGT
TGATAAGATAGACCTTTACCACTCTTGGGAAGGATGATTAAGGAAAGGGT
AGTCTATCTTCCTGGATCCATGTATGTAAGAGAGGCAGGCACAGAGATCT
GGGCAGACAGAGGTGCCCTGGAGTAGCATCTTAGGGACATAATGAGACCC
CAGGAACCTTGGGTACTGTGCAGTGGCCAATAAAGCAAGGGTTCCCTCTC
TGTGATCAGACCTTGGTTGCCACGTTGTATATGTATTTATCCTAGCACTG
CTGCACAACTCCCTTCACCCCTACTGTGGGCAAACATCACACAGTGGCAG
TTCCAGCTCACCACACTCAAGGCACATGGAAGTCACTGCTGAAGAGCCAA
GAGATGCCCAGTGCCTGGCTGGCCATGGCCATGGGCACATCAAGCCTCAT
CTATGTAGGCTTGGCGACAGGCGACAGAGCCAGGCTCTGTCTATAAAGGG
AAGACTCATCTTGTGTCATTTGAAATAATGCGTCTCCTTGGAATTATTTC
TTATGGTATTCATTGCTCTCTATACGAACTTTGCCATTACTTATTATAAC
CCTTGTTTCTTGTTGTTGACCTTTTTTTTGTTCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_e09.g1 MSMg01no184_e09.g1 CHROMAT_FILE:
MSMg01no184_e09.g1 PHD_FILE: MSMg01no184_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:34 2005
         (281 letters)



>mm_chr11_8703127_8703807
          Length = 681

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttagttcccggcagacgtttctctgggaattataaagatggttgataagatagacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttagttcccggcagacgtttctctgggaattataaagatggttgataagatagacct 260

                                                                       
Query: 61  ttaccactcttgggaaggatgattaaggaaagggtagtctatcttcctggatccatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaccactcttgggaaggatgattaaggaaagggtagtctatcttcctggatccatgtat 320

                                                                       
Query: 121 gtaagagaggcaggcacagagatctgggcagacagaggtgccctggagtagcatcttagg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagagaggcaggcacagagatgtgggcagacagaggtgccctggagtagcatcttagg 380

                                                                       
Query: 181 gacataatgagaccccaggaaccttgggtactgtgcagtggccaataaagcaagggttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacataatgagaccccaggaaccttgggtactgtgcagtggccaataaagcaagggttcc 440

                                                   
Query: 241 ctctctgtgatcagaccttggttgccacgttgtatatgta 280
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ctctctgtgatcagaccttggttgccacgtcgtatatgta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)