BAC Information

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BAC

Clone NameMSMg01-184G24
Chromosome11 (Build37)
Map Location 19,139,725 - 19,140,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627716, LOC665796, Meis1
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184G24.T7 (MSMg01no184_g24.b1)MSMg01-184G24.TJ (MSMg01no184_g24.g1)
ACCAG376722AG376723
length727730
length of high quality
(start - end)
311 (63 - 373)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no184_g24.b1 PHD_FILE: MSMg01no184_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:48 2005CHROMAT_FILE: MSMg01no184_g24.g1 PHD_FILE: MSMg01no184_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAAATATTNNNAAGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCAAGAACACATTAAAGCAATCATCCATCC
TGACCAAGTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATACGAA
AATCCATCAATGTAATCCACTATATAAACAAACTCAAAGATAAAAACCAC
ATGATCATCTCGTTGGATGCAGAAAAAGCATTTGACAAGATCCAACACCC
ATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCCATACCTAA
ACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAAT
GGAGAGAAGCTGGAAGCAATCCTTTTTATTCACCCCACAGCCCACCCTGC
CCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGAAAAAAACAGAGC
AATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAC
TCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCT
AAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGCGAAGT
AGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAA
AGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATA
GGCACAAATAATATAAAATATCTCGGC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGTTCTTCCAAGGAGCTA
CAGGTCTTCCCTAAAGGCTTTCATGTTTGCTATTTCTTACTCCCTAGCTT
TTGCCAAAACTGTCTCCTTTATAGCCTTCCTATTTTAGTTTAAGAGTTAT
TTTTTCTTTCATCTACTGGAGCTTCCCTGTTGGGTTTCCTATGGCAAAGT
GAGTGATTGCTAATTACTGGGTATTGATTTGACTACTTATTTACTGTCTC
TCTTCACTATGAATTCAAGTTTGATGGAGATGGAGATATTTGTTTTGTTT
ATCCCCTGTCTCTTTTTTTTCCCCCCCCCCCCGCAAGCTTATAAATGTCA
AATAAATATTTAACGAATAAATGAAAATAACAAAAGTGTGCATTTGTGGG
CTTTTTGGCTATAGATTTATATTATGGAGGAAATTTTTCTAGAAACGATA
TATATGGCTCAACAGAATTACTAATCATTTTTTCCTTCTGAGACAGGGTT
TCTCTGTGTATCTTTGGCTTGCCCTGTAATTCTTTTTGTACACCATGATT
GATCTCTAACTTATAAATCTGCTCGCCTACGCCTTCCCAACGCTGGCACA
ATACTTTTTCTGCTCCCCCCCCCTTCTACCCCTTTTCTCCTCCTTCTTTT
TTTTTCCTATTACCCTTTCATATACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_g24.g1 MSMg01no184_g24.g1 CHROMAT_FILE:
MSMg01no184_g24.g1 PHD_FILE: MSMg01no184_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:49 2005
         (283 letters)



>mm_chr11_19139525_19140207
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccaagttcttccaaggagctacaggtcttccctaaaggctttcatgtttgctatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttccaagttcttccaaggagctacaggtcttccctaaaggctttcatgtttgctatttct 424

                                                                       
Query: 61  tactccctagcttttgccaaaactgtctcctttatagccttcctattttagtttaagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tactccctagcttttgccaaaactgtctcctttatagccttcctattttagtttaagagt 364

                                                                       
Query: 121 tattttttctttcatctactggagcttccctgttgggtttcctatggcaaagtgagtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tattttttctttcatctactggagcttccctgttgggtttcctatggcaaagtgagtgat 304

                                                                       
Query: 181 tgctaattactgggtattgatttgactacttatttactgtctctcttcactatgaattca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 303 tgctaattactgggtattgatttgactacttatttactgtctcccttcactatgaattca 244

                                                      
Query: 241 agtttgatggagatggagatatttgttttgtttatcccctgtc 283
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 agtttgatggagatggagatatttgctttgtttatcccctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)