BAC Information

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BAC

Clone NameMSMg01-184K15
Chromosome11 (Build37)
Map Location 115,600,929 - 115,601,332
singlet/doubletsinglet
Overlap genenone
Upstream geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184
Downstream gene2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184K15.T7 (MSMg01no184_k15.b1)MSMg01-184K15.TJ (MSMg01no184_k15.g1)
ACCAG376882AG376883
length1,231694
length of high quality
(start - end)		419 (30 - 448)268 (82 - 349)
definitionCHROMAT_FILE: MSMg01no184_k15.b1 PHD_FILE: MSMg01no184_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:08 2005CHROMAT_FILE: MSMg01no184_k15.g1 PHD_FILE: MSMg01no184_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
CAGTCCTCTGCAAGAGCAGCACTTGCTCTTAACTATAGAGCCATCTCTCC
AGAGATGTCTTGAATAGCAATGTCCCCACCTACATGATCCAGGAGTCCGG
TCAACTTGGAGTGCACCAAGCAGCGAGGAATGGCCTCCGAGACTGGATGG
GTGATGCTCCCAGAGGAGAAACTGTTGCCAGTGCCAGGCTGTACCGAACC
TCATTCCCATATTCTTCCTCCTCTCCTAAGAAAGCCAGTGGGGGCTGGAG
AGGTGGCTCAGCAGTTAAACGCACTGACGGCTCTTCCAAAGGTCCTGAGT
TCAAATCCCAGCAGCCACAGGGTGGCTCACAACCACCTGTAATGAGGCCT
GATGCCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTATGTATT
ATTTTTTTCCCCCCCCCCCCCCCGGAGCATTCATGTAATAAAAAAAGAGG
GCCGACCGGAGCAAGCAGGGTTGACTGGAGCGAGTATTTTGAGTTTGTAG
GTCCTCAAAATTCAATTCCCGGTAACCATATGAAGGCTCATTACCATCTG
TACAGCTACAGTGTACTCACTTACATTATATAAATCTTTATATATATTTA
TGCCTGTCAGTGTCCCCCACCCATTTTCCTGTATCATTTTACCCTGCAGT
ATCTCTTATTCTGGTCTTGAATTTTCGTTTTTATAGTTTTGTTTTTTTTT
ATCTTCTGTTCTTTCTTTACTCTTTTTCTTTCTTTTATTTTTTTTTTTCT
TCTTATTATCTCTTTTTTTATTTTTCTCTATTTTTTTTTTTCATTTCTTA
TTTTTTTCTTTTTCTTTTTTTTTCTTTTTTTCACTTTCTTTATTCTCCTA
TTTTTTCTTTTCTCTTTCCTTTTTTTTTCTTTTTTTTATCTTTTCTTTTT
CTTTTTGTTTTTCTTTTTTTTTTACTCTTCTTTTTCTTTTTCTTCCTACT
TATTTTCTTTTCTTTTTTAATTTTCTTTTTTTTCCTTTTCTTTTCTTTTT
TTCTTTATTTTTTTTTTTCTTTCTCCTCCTTTTCTTTTTTCTATCTTTTT
TTTTGTCTTTTTATTTCTTCTTTTTTTTTATTATTTTTTATTTATATTCT
TTCTTTCCTTCTTTTCTTTTGTTAATTCTTTTTTCTTTCTATTTATTTCT
ATCTTTCTAATTTCTTCTACTTATTGTTTTA

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGAGCCAGGAATTGAA
TGTAGGTCCTCTGCAAGAGCAGTAGAGGGTTTATCATTATTATTATGTTT
TAATTTTACTACTTTTATTGTATGTACAATGATATGTTGCCTGCATGTGT
GTCTATGTGACGATGTCAGATCCCCTGGAACTGTGAGCTGCCATGTAGGT
GATAGGAATTGAACCTGGGACCTCCAGAAGAGCCAGTGCTAGTAACTGCT
GAGCCAGCTCTCCAGCCTGTAGTACAGGCTTGTGACTGTGTGGCCAGTTC
TTTTTCCTCCCACCCCCCACTTGTGTTAGTTTGGGGACAGGTTCTTACTG
GAACATTGACTACTCTGGCTGACTATGCAGATCAGGTTAGACTCCTGTCG
ATCCTATGGTAATTCTTCAGCTGCTGCTTTCTGAGGGCAGGGACTTCAGG
CTCGGGCTGCTGGGCTCATGTCGCGTGTTTTCATCTGAGTCAGAGTGAAA
TGAAGAGCCTTGTATCTTATGTTCATTGTTCTCTGCGTCCCAAAGTCACT
AAAAACCTGCTTAGCTGTTTTGATCCCTGTTTCAGACCCTGGGACATAGC
ATCTCCCTGTGGGAACGTTCTTTCATCAAGGTGCTTCTAAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_k15.b1 MSMg01no184_k15.b1 CHROMAT_FILE:
MSMg01no184_k15.b1 PHD_FILE: MSMg01no184_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:08 2005
         (419 letters)



>mm_chr11_115600814_115601632
          Length = 819

 Score =  714 bits (369), Expect = 0.0
 Identities = 396/405 (97%), Gaps = 2/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattccagtcctctgcaagagcagcacttgctcttaactatagagccatctctccagag 75
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 519 gaattccagtcctctgcaagagcagcacttgctcttaattatagagccatctctccagag 460

                                                                       
Query: 76  atgtcttgaatagcaatgtccccacctacatgatccaggagtccggtcaacttggagtgc 135
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atgtcttgaatagcaatgtcagcacctacatgatccaggagtccggtcaacttggagtgc 400

                                                                       
Query: 136 accaagcagcgaggaatggcctccgagactggatgggtgatgctcccagaggagaaactg 195
           |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 399 accaagcagcaaggaatggcctctgagactggatgggtaatgctcccagaggagaaactg 340

                                                                       
Query: 196 ttgccagtgccaggctgtaccgaacctcattcccatattcttcctcctctcctaagaaag 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttgccagtgccaggctgtaccgaacctcattcccatattcttcctcctctcctaagaaag 280

                                                                       
Query: 256 ccagtgggggctggagaggtggctcagcagttaa-acgcactgacggctcttccaaaggt 314
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 279 ccagtgggggctggagaggtggctcagcagttaaga-gcactgacggctcttccaaaggt 221

                                                                       
Query: 315 cctgagttcaaatcccagcagccacagggtggctcacaaccacctgtaatgaggcctgat 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cctgagttcaaatcccagcagccacagggtggctcacaaccacctgtaatgaggcctgat 161

                                                        
Query: 375 gccctcttctggtgtgtctgaagtcagctacagtgtacttatgta 419
           |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 160 gccctcttctggtgcgtctgaagtcagctacagtgtacttatgta 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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