Query= MSMg01no186_b05.b1 MSMg01no186_b05.b1 CHROMAT_FILE:
MSMg01no186_b05.b1 PHD_FILE: MSMg01no186_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:57 2005
(589 letters)
>mm_chr11_92082860_92083847
Length = 988
Score = 948 bits (490), Expect = 0.0
Identities = 554/586 (94%), Gaps = 19/586 (3%)
Strand = Plus / Plus
Query: 5 gaattcaaactatctaattagtatactttgattttaaaatgtt-----tctactatacat 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 213 gaattcaaactatctaattagtatactttgattttaaaatgttgggtttctactatatat 272
Query: 60 gagactctacctcaagactagtaacataaagacactaatcaaagacactaatcaaggatt 119
||| ||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct: 273 gaggctctaactcaagacttgtaacataaagacactaatcaa-------------ggatt 319
Query: 120 ggtcaaaatgaagcagtttatagtgtttcctatcagggaatcataaagcaagaaatagaa 179
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 ggtcaaaatgaagcagtttacagtgttttctatcagggaatcataaagcaagaaatagaa 379
Query: 180 tcaggtaccaagtgttccattgctctgtttactcattggtgcacatttgagttggcaagt 239
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 tcaggtaccaagagttccattgctctgtttactcattggtgcacacttgagttggcaagt 439
Query: 240 tgtgaagcacagaattcccacccaacctctatcctcacaattccacactagactttaaat 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 tgtgaagcacagaattcccacccaacctctatcctcacaatttcacactagactttaaat 499
Query: 300 ttgctcaaattatgctaatacctagtcccatcaatttctctaccttttagacaaactttg 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 500 ttgctcaaattatgctaatacctagtcccatcaatttctctaccttgtagacaaattttg 559
Query: 360 gcttttatagtcaacaaacaaataaacaaacaaaaaccaaccaaagctcaatagatgcct 419
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 gcttttatagtcaa-aaacaaataaacaaacaaaaaacaaccaaagctcaatagatgcct 618
Query: 420 ttgaccaagataaaagaggtaatgaaatggaatgttgtctgtgtttttattttctatatt 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 ttgaccaagataaaagaggtaatgaaatagaatgttgtctgtgtttttattttctatatt 678
Query: 480 gaatgacatggactcagtaaccaatgtaagatcctcaagtgtcacatggctttggaggaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatgacatggactcagtaaccaatgtaagatcctcaagtgtcacatggctttggaggaa 738
Query: 540 tagttaacattttctacacacatttgttttttaaaagaatggaaat 585
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tagttaacattttctacacacatttgttttttaaaagaatggaaat 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_b05.g1 MSMg01no186_b05.g1 CHROMAT_FILE:
MSMg01no186_b05.g1 PHD_FILE: MSMg01no186_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:57 2005
(302 letters)
>mm_chr11_92217833_92218534
Length = 702
Score = 569 bits (294), Expect = e-166
Identities = 300/302 (99%)
Strand = Plus / Minus
Query: 1 taataaaatcaatattaatttatgtccttggcttgctgcatttaaatttagaatagataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taataaaatcaatattaatttatgtccttggcttgctgcatttaaatttagaatagataa 443
Query: 61 cattcaaactaggagaaacaaacaataaaacagaatgacagtggtactaaaacagtgatt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 cattcaaactaggagaaacaaacaataaaacagaataacagtggtactaaaacagtgatt 383
Query: 121 tacaattctgcaagcttaacgttgcaaacatttatagtacagtatgtgccttgattttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacaattctgcaagcttaacgttgcaaacatttatagtacagtatgtgccttgattttag 323
Query: 181 aaaacaatggggggttttcaacaagcaggattagaccaaatccttgagtctgtagacatt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 aaaacaatggggggttttcaacaagcagaattagaccaaatccttgagtctgtagacatt 263
Query: 241 ataataatgtaaaaattattatatcttatctatttattgtgtgtattcatatgccccagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ataataatgtaaaaattattatatcttatctatttattgtgtgtattcatatgccccagt 203
Query: 301 gc 302
||
Sbjct: 202 gc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
