Query= MSMg01no187_h18.b1 MSMg01no187_h18.b1 CHROMAT_FILE:
MSMg01no187_h18.b1 PHD_FILE: MSMg01no187_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:49 2005
(318 letters)
>mm_chr11_111173091_111173808
Length = 718
Score = 584 bits (302), Expect = e-171
Identities = 311/314 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtttgggatctggctgtgaccagatgaagctgggcacacacatgtaccagggt 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcagtttgggatctggctgtgaccagatgaagctggggacacacatgtaccagggt 264
Query: 65 aaggagccaaatgatatacgaaatggtatgaaatatataactgtcaacctctactgatca 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggagcctaatgatatacgaaatggtatgaaatatataactgtcaacctctactgatca 324
Query: 125 ttttgcctgtgtcagggactctaagagatgtgccaatttcaatattatcactgaaatttt 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgcatgtgtcagggactctaagagatgtgccaatttcaatattatcactgaaatttt 384
Query: 185 atttgaaaacaaacaaacaaacaaacaaacaaaccaaaacaacaacaacaacaagacaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgaaaacaaacaaacaaacaaacaaacaaaccaaaacaacaacaacaacaagacaaa 444
Query: 245 aaccttaaggggtagagaggtagtaagaatcaacttgaactcaagtctcctagcactgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaccttaaggggtagagaggtagtaagaatcaacttgaactcaagtctcctagcactgaa 504
Query: 305 ctagaaagccttgt 318
||||||||||||||
Sbjct: 505 ctagaaagccttgt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_h18.g1 MSMg01no187_h18.g1 CHROMAT_FILE:
MSMg01no187_h18.g1 PHD_FILE: MSMg01no187_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:49 2005
(647 letters)
>mm_chr11_111202393_111203438
Length = 1046
Score = 1228 bits (635), Expect = 0.0
Identities = 644/647 (99%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 1 ttactaacatggctgcctaaatatgatctggatatttttgccctaggtgctttgttggtc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttactaacatgactgcctaaatatgatctggatatttttgccctaggtgctttgttggtc 821
Query: 61 ctctgttgttatatatgaagcaattccagggctcagaacactgtggactgatatgtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ctctgttgttatatatgaagcaattccagggctcagaacactgtggactgatatgtggtg 761
Query: 121 gatggagtattaactaaattaaatttgtaacaacattaatattttttcagctgcatagtt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 760 gatggagtattaactaaattaaatttgtaacaacattaata-tttttcagctgcatagtt 702
Query: 181 atgtaaactttcttttcaagatgattgttctcatgctgatatattattcattgttgttgg 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 atgtaaactttcttttcaagatgattcttctcatgctgatatattattcattgttgttgg 642
Query: 241 cattgtttaaatccagtgtcaacattacaataaaatttccaaatattttcaaatgtcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cattgtttaaatccagtgtcaacattacaataaaatttccaaatattttcaaatgtcttt 582
Query: 301 tggttttcttaaaggtaaaggtagtcaaggagttagaccaagatggttatgtgttcccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggttttcttaaaggtaaaggtagtcaaggagttagaccaagatggttatgtgttcccag 522
Query: 361 aggatgataaaatatacatgctgttttcttgtttgctgagatcatttacctcagtttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggatgataaaatatacatgctgttttcttgtttgctgagatcatttacctcagtttcat 462
Query: 421 tgtcttctttagagatatattcaacatagaaaacagacaaagtctttagagtccactccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgtcttctttagagatatattcaacatagaaaacagacaaagtctttagagtccactccc 402
Query: 481 atctcaagctatatttcaatgaaagtcctttggtggttcaacttagattaatttaaaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atctcaagctatatttcaatgaaagtcctttggtggttcaacttagattaatttaaaagt 342
Query: 541 agtatcaaaagtttggtttttccatatgaatgaagctaaccatcccctcgagtaggatca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agtatcaaaagtttggtttttccatatgaatgaagctaaccatcccctcgagtaggatca 282
Query: 601 gtttgtggttgactagtcaatatgattatttgattatgagaaagacc 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtttgtggttgactagtcaatatgattatttgattatgagaaagacc 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space: 659932
Effective search space used: 659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
