BAC Information

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BAC

Clone NameMSMg01-189B07
Chromosome11 (Build37)
Map Location 80,278,780 - 80,403,631
singlet/doubletdoublet
Overlap genePsmd11, Cdk5r1, Myo1d
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189B07.T7 (MSMg01no189_b07.b1)MSMg01-189B07.TJ (MSMg01no189_b07.g1)
ACCAG379886AG379887
length731720
length of high quality
(start - end)
313 (46 - 358)231 (132 - 362)
definitionCHROMAT_FILE: MSMg01no189_b07.b1 PHD_FILE: MSMg01no189_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:57 2005CHROMAT_FILE: MSMg01no189_b07.g1 PHD_FILE: MSMg01no189_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,403,325 - 80,403,631)(80,278,780 - 80,279,010)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTTATTGACTATACCTAAAGCTAATCACACAATCAAAAGGAG
GCTTTTGTTATCCAGATGTACACAACCACACAAAAAGTTTCCATCATACT
TCCTATTTGTGACTACAACACAGGAATATACTTGTACCCACCACCTAGGG
AGGGAGGTTGTGCCCACCCTTGTTTCTGGTATCTTGCTATCTGGCAATCA
GAACAAAGAGTCAGGTGGTTCTGAGAATGCGGCCATCTGTAGAAAAGCCT
GCTGCAGTGCTTCTCATTCCGAGGAGGACAGTTTCACTCTGGATTCTGGT
GAGTATATTTTGAACACCCCCTCCCGATGGCTTGCTGATGGCCCTGTATT
TCTAAGTTTAGTACAAACACCCTTCTTCATGCTTGCTTAGATTATGTCCT
CTTAGACTCTTTTAATCCCAAAGGGACACCAAGGCAAATTTGATATGCTT
CCGAAGAGCCTTCCTCCTAGTGCGTTGAGTATATTGAAGCAGCTGCTTTC
CATTAACAGCAGTTATTATAAAGTGTTCGTTAAGGTGAGCGAGTACTGCA
AATAGCTCCTCTCACCACTATGCTGTTCTGTTCTGACTCTGCAGCAGCTT
TATCTTTGACCCCCTGTGGAAATGACCGAAACTCTAAACAGCTGCCTTGA
AGTCGCTAGAGAAAGCAGATACTCGGATTTT
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCAGCCAGGGCTACACAGAG
AAACCCTGCCTTAAAAAACATTTTCAACCACTTCAAAGTTAGAGATGTTA
ATGTTGATCCCATAGGCTCTTCACCCAGAACCATCTTGAATCTAGGACGT
GGTTCCTTACACTGAGTGCAGTGGGACGCTGAGCTGTGCTTAACTCATCT
GTGCGCATTTTATGCCAAGTTGTCATTCGGGACTGGAGAAATGTTTCACA
GGCCAAGAGAATGCTCTGCTCTTACAGAGGACCTGAGCTGCATTCCCAGC
ACTCTTATCCGCATTTTTTTTGTTCCTATCACTCCAGCCCAGGATGGACA
CACACACACACACACACTCACACACATATAAAAAAAAAAACACACACGTA
CACTCACACACACGTGTACACATATGTGCACACGCTCTCTTTTGCGCGTT
CTCTCACATGCACCCTCCTTGTAATAAAATTTGTTATTTATATGTAATAT
TAAGATACTTACTTTTACCTTGTGGACGGTCACTCCTTACCCCCGTTTTG
TTTCTTTGGCTTAACTTACCTCTAGGCTTACTTCCTTTTTTAATTTCTTT
TTGTATTCCCAGCTCGATTCGCTTTCTGTGAACAAGAACTGCCTTTCTCT
GATTTATTTGCTGTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_b07.b1 MSMg01no189_b07.b1 CHROMAT_FILE:
MSMg01no189_b07.b1 PHD_FILE: MSMg01no189_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:57 2005
         (313 letters)



>mm_chr11_80403122_80403834
          Length = 713

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccattttattgactatacctaaagctaatcacacaatcaaaaggaggcttttgt 63
           |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 510 ggaactccattttattgactatacctaaggctaatcacacaatccaaaggaggcttttgt 451

                                                                       
Query: 64  tatccagatgtacacaaccacacaaaaagtttccatcatacttcctatttgtgactacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatccagatgtacacaaccacacaaaaagtttccatcatacttcctatttgtgactacaa 391

                                                                       
Query: 124 cacaggaatatacttgtacccaccacctagggagggaggttgtgcccacccttgtttctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cacaggaatatacttgtacccaccacctagggagggaggttgtgcccacccttgtttctg 331

                                                                       
Query: 184 gtatcttgctatctggcaatcagaacaaagagtcaggtggttctgagaatgcggccatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtatcttgctatctggcaatcagaacaaagagtcaggtggttctgagaatgcggccatct 271

                                                                       
Query: 244 gtagaaaagcctgctgcagtgcttctcattccgaggaggacagtttcactctggattctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtagaaaagcctgctgcagtgcttctcattccgaggaggacagtttcactctggattctg 211

                  
Query: 304 gtgagta 310
           |||||||
Sbjct: 210 gtgagta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_b07.g1 MSMg01no189_b07.g1 CHROMAT_FILE:
MSMg01no189_b07.g1 PHD_FILE: MSMg01no189_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:57 2005
         (231 letters)



>mm_chr11_80278580_80279210
          Length = 631

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaagttagagatgttaatgttgatcccataggctcttcacccagaaccatcttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaagttagagatgttaatgttgatcccataggctcttcacccagaaccatcttgaat 260

                                                                       
Query: 61  ctaggacgtggttccttacactgagtgcagtgggacgctgagctgtgcttaactcatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggacgtggttccttacactgagtgcagtgggacgctgagctgtgcttaactcatctg 320

                                                                       
Query: 121 tgcgcattttatgccaagttgtcattcgggactggagaaatgtttcacaggccaagagaa 180
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 321 tgcgcattttatgccaagttgtcattcaagactggagaaatgtttcacaggccaagagaa 380

                                                              
Query: 181 tgctctgctcttacagaggacctgagctgcattcccagcactcttatccgc 231
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tgctctgctcttacagaggacctgagctgcattcccaacactcttatccgc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)