BAC Information

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BAC

Clone NameMSMg01-190J08
Chromosome11 (Build37)
Map Location 115,139,673 - 115,139,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr
Downstream geneFads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190J08.T7 (MSMg01no190_j08.b1)MSMg01-190J08.TJ (MSMg01no190_j08.g1)
ACCAG380881AG380882
length7601,241
length of high quality
(start - end)		321 (45 - 365)---
definitionCHROMAT_FILE: MSMg01no190_j08.b1 PHD_FILE: MSMg01no190_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:53 2005CHROMAT_FILE: MSMg01no190_j08.g1 PHD_FILE: MSMg01no190_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGGCCAGATGAACGGCTAGGTGACAGCTTGGTGAGCTTCATGCT
GAGTCAGTCCATTTCAACTTTCAGGCTGGTCTGCTGGAGCCTTGTGTAGG
AGCTTAATAATCCAGAAGTTTCCCCTGTTTTGTATTTCATATTTTTTACA
CTATTTTAAGAATGTTTTTAGCCATGCTGCGGTGGCACTGGGGAGGCAGA
GGAGGGCAGAACTGTGAGTTCGAAGCCAGCCTGGTTTACAGAGAGAAGAC
AAAAGAACAACAACAAAAATGAAGGTTATTTTTAGTTGAAGTTTGACATA
CAGAGAAGTGCATTTTTTTCTTTCATACCCCCCCGCCCTATGAGACTGTA
GGTGTAATAATGTGACCTACAACCAGACTGAGAACCAAAACTCAGTATCC
CAGAATCCTCTGCTCAACTAATCACTCCCCACTTTGTTTGTTTTGCTTTT
CAAGACAGTGTTTCTCTGTGTAACCCTGGCAGTCCTGGAACTCACTCTAT
AGACCAGGCCAGCCTTGAACTGGTAGAGATCTGCCTGCCTCTGCCTCCCT
AGTGCTGGGATCAAAGGTGTGCACCACCATTGATTGGCTCCACCACTTTC
TTATTGAGAGGTAATATGATTCTCTAACATGTCATTGTGTTTTACGCCTG
CCCCAGAAGACTAGTAGGTAAGATAAATGCTCCCACAAGCCTATACATAA
ATTATTTACG

TCATTTTTTTTTTTATANTTTNGNAGAGAGATNCATAATTTAAATGTTCT
ATGATATTGTTTAGAGGTGGAGGGGCGCCTGGTTTTGTCGAAATTTAGCG
TGACACTATCCTAACGATTTTTCGTTAATTTTTTGATCCGCTTTTTTATT
ACAATAAACATTTATAGGTATTGCATCCCTCCCACACTTCTCTCCCCCTT
ATCGCTGGTGGTGGTGGGTGGTTGTCACCACTGCTATTTTTTTTTTTTTT
TATATATTTTTACAAATTTTATTGTTTTTTATTTTTCATTTATCCTTATT
TTTTTCTCGCTTATTACTCTTTTCTTTTCATTTTGTTTTTTTTCGCCCTC
TTTTATACTATTATCCTTCGAATTTATGCATTTTTATTTACCGTTTTTAG
TGTGTCGTTAGAATGTGGGGCAGAGGAAAAGGGTATTTTATTTTTTTTTG
CCCGTCCCTCCTCCGTTTGTTTTTATTTTTTATTGTTTATTATACCAATT
AAGCCGATTTGTGTCTAAAAAAAGAAAATTTTGTTTTTTTTTTTTCTCAC
CCCCCCCTCTCCCCTCCAAAGAAAATAGTATATTATATAATAATATGCAT
TTATACCTTTCTTTTTCTTTACTTCTCTCTAATAATAAAAAATGATAAAA
ATAGACGACTGTATTGCGGTTGGTGTTGCCTCCTCTGATTATTTTATTTG
TATCCGTGTATCTTTTATACATCACCAGCGTTAACTATGTTATTATAAAT
TTTGGTGAGAGGCATGGCACAAATAGTTAGTGTTTATGTGATCTGAATAT
TTATTGTACAGCGTCTTATTGTTTATTTATCTTTCCCCACGCCTGTTTAT
TCGACAATAATTCTCTTATTTTATGATCTGTATCTGTGCGCGTTTACTGT
TATATGTTGCTTTTTTTTGTAAGTACCGTATATATGTGTGCCTGCCTATA
TATCGCCTGTTTGTTGTCAATTTACGCGCTGTACTCCTATCACCTCCGTA
TTTTAACTTATTCTTTTACACTTTATACTTATTCGCACATATTCTCGTGT
GTCGTATCTGTCCGTATTCTTTGACGCTTCATCTTTATGTATTGTCAACA
GTTTATTATATTTGTGGTTATTGTAGTGTGCACAACGCTGACACGAAGTT
ATTATGCGAGCATGTGAAGTTCTTAGGACATCGCGCGGTGATATTTAGAG
GTAGTTTAAACAGACATATGCCCCATATGCATACATTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_j08.b1 MSMg01no190_j08.b1 CHROMAT_FILE:
MSMg01no190_j08.b1 PHD_FILE: MSMg01no190_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:53 2005
         (321 letters)



>mm_chr11_115139470_115140190
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgggccagatgaacggctaggtgacagcttggtgagcttcatgctgagtcag 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 ggaattcttgggccagatgaacggctaggtgacagcttggtgaacttcatgctgagtcag 263

                                                                       
Query: 64  tccatttcaactttcaggctggtctgctggagccttgtgtaggagcttaataatccagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatttcaactttcaggctggtctgctggagccttgtgtaggagcttaataatccagaa 323

                                                                       
Query: 124 gtttcccctgttttgtatttcatattttttacactattttaagaatgtttttagccatgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttcccctgttttgtatttcatattttttacactattttaagaatgtttttagccatgc 383

                                                                       
Query: 184 tgcggtggcactggggaggcagaggagggcagaactgtgagttcgaagccagcctggttt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 tgcggtggcactggggaggcagaggagggcagaactgtgagttcgaagccagcctggtct 443

                                                                       
Query: 244 acagagagaagacaaaagaacaacaacaaaaatgaaggttatttttagttgaagtttgac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagagagaagacaaaagaacaacaacaaaaatgaaggttatttttagttgaagtttgac 503

                            
Query: 304 atacagagaagtgcatt 320
           |||||||||||||||||
Sbjct: 504 atacagagaagtgcatt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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