BAC Information

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BAC

Clone NameMSMg01-191N22
Chromosome11 (Build37)
Map Location 85,741,349 - 85,741,631
singlet/doubletsinglet
Overlap genenone
Upstream geneCar4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4
Downstream geneLOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191N22.T7 (MSMg01no191_n22.b1)MSMg01-191N22.TJ (MSMg01no191_n22.g1)
ACCAG381731AG381732
length753752
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_n22.b1 PHD_FILE: MSMg01no191_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:38 2005CHROMAT_FILE: MSMg01no191_n22.g1 PHD_FILE: MSMg01no191_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGAAAGTATTCAGTCATCCAGGGGGAAGGGCCAGAGGTATTGA
ACCATATAAGAGGGGAATACGAGAAAGGTTGAAACATTGTTTTTACATCT
CTAAGCTGTCCTAGAGACGAATCAAAATGAGGTCCCCACCAGTCAGTCGG
TGTTGGTTTTACATGTGATGGCTTTTCTGAAAGAGTGAATCACACAGAAG
AATACATCCGCAAATACTGAAGATAGCAATGTGCTCCTCTGCCCTTAGTG
GGAAACGGCAATGTGTTTTTGTACAATTATTGAATGAAAATTATGCTCGC
TTACGGATTCTAGTTCTTCCCCACCCCCGCGATGGTCGCCATCTGGAGCT
AAGAAGTTTCTTCTTCATATAATAACAGAGAAGACATCGTTCGCGAGAGG
CAGAACATAGAAAAGCGATTATCTTTCATTCCGCAAGGTGGTGTGTTTTA
TGTAGACGCTCGCTGCCGGCGAGAAGATTTTCTTCTGACTCTAACGCAGT
GCTGATTAAATGCTTCCCTTATATTTGACTTGTTATGGACTCACGTTAAA
ACAATGACTCCAGGTGCTGACAACTGTCCGACAATGTAGGCTTACTTACG
TACTTGCTCTCAAATGGTATGATCAAAGTCCAGGTAGTTCTGAAGGTGAC
CATAAAGACACGTTGAACAGGACACGTTGTGAGATCCAAAACAATTGTTG
ACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGGGTATGTGAAA
CCTCATCTCAATAAACATTATCCCCGGAGAAAATAGTGTTGGGGCAAAGA
TAAGCAGAGTAGAGTGATTATATTTAGATGAAAATGTTGGGATGAAATCC
TTTGTTTTGTATAATTAATAAAAATATTTAAAAATTAAATAAGATAAAAT
ATGAAGAAAAGTTACATGTGAATATATTGCACTGTTGTTACCAAAATCTT
AAGGACTCCTTTGATATATATTATCATTCAGTCCTTGCCCGGCATGAGCA
GGGTCCTGTGNTTGANCTCCCGATCAACCCCAAACCAAACCAAACCAACC
AACCAGCAGGAGGACTCAGTGACAGAGAAAAAATGTTGATACATCGCAAA
GACTTCCCTCCTTCAGGAGGTACTTCAGGACTCTGACGTGCAGAAGGAGA
GCCATCACCTTATGCTGCTTCTAGATAGGGCCCAGGGTTTGGGGGATGGG
AGGCCCCAGCACTGAGTCAGGATGTGAGCCATGTGCAACTGTAAGCTGTA
GAACAGCAGTGGGAACTTAGATCTGCTCTAAAGCTAGGCAGGCTCTACTG
TCCATATCAGGGCTATGTTGACATTGAACCCGCCTCTGTCGTGCAGCTTC
AGATGGACTCCGCCCCTCATTCTTTTTGGGGGGATCTCCATCACCCCCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_n22.g1 MSMg01no191_n22.g1 CHROMAT_FILE:
MSMg01no191_n22.g1 PHD_FILE: MSMg01no191_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:38 2005
         (283 letters)



>mm_chr11_85741150_85741832
          Length = 683

 Score =  489 bits (253), Expect = e-143
 Identities = 275/287 (95%), Gaps = 9/287 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctggggtatgtgaaacctcatctcaataaaca-----ttatccccggagaa 55
           |||||||||||||||||||||||||||||||||||||||||     ||||    ||||||
Sbjct: 200 aaggccagcctggggtatgtgaaacctcatctcaataaacaaatatttat----ggagaa 255

                                                                       
Query: 56  aatagtgttggggcaaagataagcagagtagagtgattatatttagatgaaaatgttggg 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatagtgttggggcaaagataagcagagtagagtgattatatttagatgaaaatgttggg 315

                                                                       
Query: 116 atgaaatcctttgttttgtataattaataaaaatatttaaaaattaaataagataaaata 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgaaatcctttgttttgtataattaataaaaatatttaaaaattaaataagataaaata 375

                                                                       
Query: 176 tgaagaaaagttacatgtgaatatattgcactgttgttaccaaaatcttaaggactcctt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaagaaaagttacatgtgaatatattgcactgttgttaccaaaatcttaaggactcctt 435

                                                          
Query: 236 tgatatatattatcattcagtccttgcccggcatgagcagggtcctg 282
           || ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 436 tggtatatataaacattcagtccttgcccggcatgagcagggtcctg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)