BAC Information

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BAC

Clone NameMSMg01-192D12
Chromosome11 (Build37)
Map Location 39,735,379 - 39,907,373
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192D12.T7 (MSMg01no192_d12.b1)MSMg01-192D12.TJ (MSMg01no192_d12.g1)
ACCAG381970AG381971
length1,2631,250
length of high quality
(start - end)
410 (41 - 450)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no192_d12.b1 PHD_FILE: MSMg01no192_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:17 2005CHROMAT_FILE: MSMg01no192_d12.g1 PHD_FILE: MSMg01no192_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,906,993 - 39,907,373)(39,735,379 - 39,735,755)
sequence
NNCCCTCATTGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCAACATACAACTTCTTGTTAAAATTATTTCATTCTAAACCCAACCCTT
TATTTGGTTATAGTAATAATGTTATTTCAAGTAAATTAACCAAATACATT
GTGCAGACTTCATTTGGATTTAGATTAGCAAAAACATGCAAATAAAGTCT
GTGTTTTTGCAAACCCTTTGCACACAAATCCCACCAGGAGAAAGCGGATC
TCCCAGGACTGCTCTTCTTCCTAAGGTCAGAGGTGAGATCCCCACTTTGG
CTCCAAAAATTGTCCAAAGCAGTACAGGCCAGGAGCACATGGGACACAGT
AACAATGGAACAGCTGGGGACAGGATCATTCCTGTCTCCATTTGTACACT
AGAGCTAAGGCTGTACCATAGCCTTCTGCACCCAACCCCCTCCCAAGATT
TTTTTGTCCCCGCCCGGAGTGCTGACATACCTAATAACAAAAAGAGGGTT
ACAGGCCCACAGGAGGGACAAGCTCCAGTCAGAGACAGCAAGACTAACTA
ACACCAGACATAACTAGATGGGGAGAGGCAAGCTTAAGAACCTTACCAAC
AGAAACCAAGCCTACTTGTCATCATCAGAACCCAGTTCTCTCACCAAAGC
AAGTCCTGAATATCCCAACACACCATAAAAGCAAGATTCTGATTTAAAAT
CACATTTCATGATGATGATAAAGGACTTTAAGAAGGACATAAATAACTCC
CTTTAAGAAAAACAGAACATGTGTAAACAAGTAGAAGCCCTTAAAGAGGA
AACACAAAATCCCTTTAAAATTCCAGGAAAACACAACCAAATTAGTGAAG
GAATTGAACAAAATCATTCAGAATCTAAAAGTGGAAATAAAGAGTTCCCC
AAGGGAAACAACTCTGGAGATAAAAAACCCAAGAAAACCCAGCCAGGGGG
GTTTGCAGCCTTTAATCCCTCCACTTGTGAAACAAAAGAAAGGGGAATTT
CTGAATATTGAGCCACCCCTCGCTCCTTAAAGAGTATTTAGAAACACCGT
GCTTTCTATAAAAAAACTGTTCCTATAAACCCCCCCCCCCCCCCTCATAA
AAAAACTCCTAAAATAAAAATAGTTTCCTATTTATTCTCTTTTTCTCCCC
TTTCCCATTACTTTTGACTCTTTCACCAATATCGTCTTATTTATTTCCTT
TCTTCTCATATCTAATCTCCTAATTCATATCTCATTATTGATTTTCAATT
CTCTTTCTTCTTC
NNCCCTTTGATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTGAAAGTCACTTGTATAGAGCAATC
AGGCATGTTCATGGGAGGGTGGTGTTGCCATGCAAATTGCTTAACATTAA
GATGTAGACTTCATATTTTTTACAAGCTCTACATTATTATGATTATGATT
ATTATTATTCACCCCTCCAACTCTTCATATTTTTCTTACTCTTTTTGCCT
CAATATACCTTCCCATAAGAATCAAAGTAACTTAAAACTTAATTACATAA
AACTCTTGAACTTGAATATGAGTTGACTATGTCTGCTCAATCTGCCATAG
CTAAAACTGTACATTTTTTTTGAAATTATTTTTCTCGTAAAGAAAGCCAT
CTTCGTGCCTATGACTCTGTTTCTATGACAAGCTATTAAACTGCCTTATT
TTTTCTCCCCCCCCCGTTCCTGTTTAAGACTCACCTAAAAAAAGGGGGGA
GGGGAACTAGGAAAGAGGATAACATTTGAAACGTAAATAAAGAAAAATAT
CTAATTTAAAAATCAGCTTTTATGTATACTTGGGACTCATGTTTCCTCCT
TCATTTTATGGACCATTTGTTTGTATGACTATGATTATAATGTTGACTGG
GTATATGTTTACATTTTGGTGTTACTTTCAAGATTAATGTTGTTACATAT
AGTCCACGAGAAGAAAAAAATATGCCCGAGCACTGGCATGGTATTTTTCT
AAGGACCCAAACTGTACTCCATTTGAGGCAAATCTTCGAGAGGGTTATTT
ATGGCCCCCAGAACCGTATGGCTTTCTTCAAGCCCCATCTGTGGGACTTC
CTATCTACTGGAACCCCCAGAAAAGTCTTTTAATTGTTCCGGATGCGCCT
TAAATGCCTGGTTTTTACAGGATTCCTCCTCCCAGACCTTTGGGATAACA
ACACTTCCCCCAAACCCTACCTTTGTTCCTCTAAAATTATTTTCTTCTCG
TCCCCTTTCTTAATTACTGTGTCTCCCTTATCTATTACATCCCCGTATCT
CTATCTGTTTTACACTTCCCTCCCTTGAATACTCCCTCTCTTTTCCTTCT
TCTTCATTCTTTTCTTCATCCCATATCACATACCTTTCCTTTTCTTTTTC
TTATTTCTCCCTATTACTATCCATCGCACTCCCTTCATCATTCTTTTTTC
ATTCCTTTCGTTCTTATCTCTTCTTACTTATATNCCTTCTTTCCCCCTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_d12.b1 MSMg01no192_d12.b1 CHROMAT_FILE:
MSMg01no192_d12.b1 PHD_FILE: MSMg01no192_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:17 2005
         (410 letters)



>mm_chr11_39906993_39907802
          Length = 810

 Score =  667 bits (345), Expect = 0.0
 Identities = 372/381 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcaacatacaacttcttgttaaaattatttcattctaaacccaaccctttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaattctgcaacatacaacttcttgttaaaattatttcattctaaacccaaacctttatt 322

                                                                       
Query: 65  tggttatagtaataatgttatttcaagtaaattaaccaaatacattgtgcagacttcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tggttatagtaataatgttatttcaagtaaattaaccaaatacattgtgcagagttcatt 262

                                                                       
Query: 125 tggatttagattagcaaaaacatgcaaataaagtctgtgtttttgcaaaccctttgcaca 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatttagattagcaagaacatgcaaataaagtctgtgtttttgcaaaccctttgcaca 202

                                                                       
Query: 185 caaatcccaccaggagaaagcggatctcccaggactgctcttcttcctaaggtcagaggt 244
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 201 caaatcccaccaggagaaagctgatctcccaggactgctcttattcctaaggtcagaggt 142

                                                                       
Query: 245 gagatccccactttggctccaaaaattgtccaaagcagtacaggccaggagcacatggga 304
           ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gagcttgccactttggctccaaaaattgtccaaagcagtacaggccaggagcacatggga 82

                                                                       
Query: 305 cacagtaacaatggaacagctggggacaggatcattcctgtctccatttgtacactagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 81  cacagtaacaatggaacagctggggacaggatcattcctgtctccatttgtacacaagag 22

                                
Query: 365 ctaaggctgtaccatagcctt 385
           |||||||||||||||||||||
Sbjct: 21  ctaaggctgtaccatagcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no192_d12.g1 MSMg01no192_d12.g1 CHROMAT_FILE:
MSMg01no192_d12.g1 PHD_FILE: MSMg01no192_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:17 2005
         (379 letters)



>mm_chr11_39735179_39735957
          Length = 779

 Score =  690 bits (357), Expect = 0.0
 Identities = 372/377 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgaaagtcacttgtatagagcaatcaggcatgttcatgggagggtggtgttgccat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgaaagtcacttttatagagcaatcaggcatgttcatgggagggtggtgttgccat 260

                                                                       
Query: 61  gcaaattgcttaacattaagatgtagacttcatattttttacaagctctacattattatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaattgcttaacattaagatgtagacttcatattttttacaagctctacattattatg 320

                                                                       
Query: 121 attatgattattattattcacccctccaactcttcatatttttcttactctttttgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatgattattattattcacccctccaactcttcatatttttcttactctttttgcctc 380

                                                                       
Query: 181 aatataccttcccataagaatcaaagtaacttaaaacttaattacataaaactcttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatataccttcccataagaatcaaagtaacttaaaacttaattacataaaactcttgaac 440

                                                                       
Query: 241 ttgaatatgagttgactatgtctgctcaatctgccatagctaaaactgtacatttttttt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaatgtgagttgactatgtctgctcaatctgccatagctaaaactgtacatttttttt 500

                                                                       
Query: 301 gaaattatttttctcgtaaagaaagccatcttcgtgcctatgactctgtttctatgacaa 360
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 501 gaaattatttttctcgtaaagaaagtcaacttcgtgcctatgactctgtttctatgacaa 560

                            
Query: 361 gctattaaactgcctta 377
           |||||| ||||||||||
Sbjct: 561 gctattcaactgcctta 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)