BAC Information

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BAC

Clone NameMSMg01-193J02
Chromosome11 (Build37)
Map Location 84,645,945 - 84,764,458
singlet/doubletdoublet
Overlap geneGgnbp2, Pigw, Znhit3
Upstream geneTcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224
Downstream geneCar4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193J02.T7 (MSMg01no193_j02.b1)MSMg01-193J02.TJ (MSMg01no193_j02.g1)
ACCAG382818AG382819
length760756
length of high quality
(start - end)
612 (44 - 655)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no193_j02.b1 PHD_FILE: MSMg01no193_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:04 2005CHROMAT_FILE: MSMg01no193_j02.g1 PHD_FILE: MSMg01no193_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,764,126 - 84,764,458)(84,645,945 - 84,646,242)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGG
AATTCAACTGAATGATTCCGGGGAAGATCTGATAGAATTCCGGTGACTTT
CTAGTAAGAGCTGGAGAAACTTCAGTTGTGACACAAAATAACACTTAACA
TCCTGTGGCTTAACAGATAAAGTTAGATCTAACATCCTGTAACTATTGGG
TAAAAAACCTTTTGTAATATATTAACAAGTTGTAGTTCCACCAACCGAAG
GCTTAAAGTTCTCTCAGAATCTCAGACCTACAGCAGCATTCTCTCCATCT
GGCTGAAACCACCTCTCTCATGTCTCCTCAAATGAATTTGGAAAGTATCT
TGATTTATGACTTTCTTGGTTCTATGACTTACAAAAAGTTCACGAAGTGG
CTTCCACCATGGAGCACGGATTTTTCGGGTGACCTAAATCTGAGTTTCTT
GGCCACAGTCACTCCTAGCTGGCTTTGGAATAAACTTCTTCTTATCTCAA
GAGCCGTGTTTTGGCTTGGACAGTCACGATGCTCAAGCAATGATCCACTT
TTTGTGGGAAGAGCCACTTGGATGGAAACAAGGTGGGTCTGAGGCACCAG
TTATCTCCTCAGCTGGCTTGTGAAGGCTTTGCAGGCTCTCTCGGCTCCTC
TTTGTTTGGCAGATGCCTTTGTAGTTTTGGGTTTGCTTTTGAAATATTTG
ACTTAAGTGTCTATATTGTTTGCTTGCTCTTGAAGCTTTTGGGCTCTACA
GGCAGCTTGG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTGGGCAGTCTGAATCTCTA
CCCTCATTTGCTCTTCATGCTCTCTCCACCAACAATGGTTAGATACAAAG
TTCACGAGTGGCAAATACTAAAGTACCACCACGGTGAGTAGAAACATGTA
CACCACATTCTACTATGCGTATTAATAAATACTCTTTATTTTAAATTTTG
CACATTGCCTTTAACATTCTGTCCAGATGCTTTGCAAGTGGATGTCTACT
GTAAACCATATATCCAGCTCACTGTCATTTCTGTACAGAGGTGTAAGTAC
AACATTACTTTTGCCACTAAGTTGCTTTAGTAAGTCTCACAGGAAGAGAA
ACGTTTAATGAAGAGATGGCTTAAATCATAGGCAGGCCTGCTCAGCCACG
AAACTAAAGACACAAGCCTGAAGAAAGAACAAACGAATGAGGTTACCTCC
ACCGTCTCCCAAAACAAGGAATCACATTGATTTAAGATTTAAGGTAAAAT
TTTGCCAGAAGTCACTAAATTAGGAGTTTTTAAAAGAGAAGGCGCAGTAG
TCATCTTGAGTGTTTCATTGAAAGACAGAGCTATTTTATTTATTTAATTT
GCTCCAGCCGTTGTCAGCCAGCCACTACAAACGGGCCTCTTGTGATCTTT
TAAGCGGCAGTATTTATTAAATTTCTCCTTCAGATGCTGTCGGTATTGTT
CTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_j02.b1 MSMg01no193_j02.b1 CHROMAT_FILE:
MSMg01no193_j02.b1 PHD_FILE: MSMg01no193_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:04 2005
         (612 letters)



>mm_chr11_84763447_84764458
          Length = 1012

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                        
Query: 280  tctcctcaaatgaatttggaaagtatcttgatttatgactttcttggttctatgacttac 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tctcctcaaatgaatttggaaagtatcttgatttatgactttcttggttctatgacttac 953

                                                                        
Query: 340  aaaaagttcacgaagtggcttccaccatggagcacggatttttcgggtgacctaaatctg 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  aaaaagttcacgaagtggcttccaccatggagcacggatttttcgggtgacctaaatctg 893

                                                                        
Query: 400  agtttcttggccacagtcactcctagctggctttggaataaacttcttcttatctcaaga 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  agtttcttggccacagtcactcctagctggctttggaataaacttcttcttatctcaaga 833

                                                                        
Query: 460  gccgtgttttggcttggacagtcacgatgctcaagcaatgatccactttttgtgggaaga 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  gccgtgttttggcttggacagtcacgatgctcaagcaatgatccactttttgtgggaaga 773

                                                                        
Query: 520  gccacttggatggaaacaaggtgggtctgaggcaccagttatctcctcagctggcttgtg 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  gccacttggatggaaacaaggtgggtctgaggcaccagttatctcctcagctggcttgtg 713

                                             
Query: 580  aaggctttgcaggctctctcggctcctctttgt 612
            |||||||||||||||||||||||||||||||||
Sbjct: 712  aaggctttgcaggctctctcggctcctctttgt 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no193_j02.g1 MSMg01no193_j02.g1 CHROMAT_FILE:
MSMg01no193_j02.g1 PHD_FILE: MSMg01no193_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:04 2005
         (298 letters)



>mm_chr11_84645745_84646442
          Length = 698

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttgggcagtctgaatctctaccctcatttgctcttcatgctctctccaccaacaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agtcttgggcagtctgaatctctaccctcatttgctcttcatgctctctccatcaacaat 260

                                                                       
Query: 61  ggttagatacaaagttcacgagtggcaaatactaaagtaccaccacggtgagtagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttagatacaaagttcacgagtggcaaatactaaagtaccaccacggtgagtagaaaca 320

                                                                       
Query: 121 tgtacaccacattctactatgcgtattaataaatactctttattttaaattttgcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacaccacattctactatgcgtattaataaatactctttattttaaattttgcacatt 380

                                                                       
Query: 181 gcctttaacattctgtccagatgctttgcaagtggatgtctactgtaaaccatatatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttaacattctgtccagatgctttgcaagtggatgtctactgtaaaccatatatcca 440

                                                                     
Query: 241 gctcactgtcatttctgtacagaggtgtaagtacaacattacttttgccactaagttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcactgtcatttctgtacagaggtgtaagtacaacattacttttgccactaagttg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)