BAC Information

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BAC

Clone NameMSMg01-193M20
Chromosome11 (Build37)
Map Location 118,239,873 - 118,273,343
singlet/doubletdoublet
Overlap geneLgals3bp, Cant1
Upstream geneEG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8
Downstream geneC1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193M20.T7 (MSMg01no193_m20.b1)MSMg01-193M20.TJ (MSMg01no193_m20.g1)
ACCAG382960AG382961
length764750
length of high quality
(start - end)		329 (46 - 374)605 (82 - 686)
definitionCHROMAT_FILE: MSMg01no193_m20.b1 PHD_FILE: MSMg01no193_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:27 2005CHROMAT_FILE: MSMg01no193_m20.g1 PHD_FILE: MSMg01no193_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,239,873 - 118,240,197)(118,272,739 - 118,273,343)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATTCCTCCAAGTCAGCTGGAGATACAGGTGGAGTAGGAGTGGC
AAGCAGGTTGCCAGCTGTCACTGCACAGATGGAGCAGTGGGCAAGGTCTT
CCCTCTTTCCCTCACCTGGACAGCTCGAGGATGCTCTAGGATCTTGGGAC
TGTGCCCTCTGGACTTTTCCAGCCCCCAGCCTGCACCTTGTCATGTTTGG
TTTTACCCAGACCACCTTTGGACACTTCCCTCCTCTTGTCTTGGCGAGCA
CGCCCTGAGGTAGTCCTTGGCAGAACTGGTGCCATGTTCCTGCAGTTGAA
ACCAATGCTCTCCCTGTTTCAGGAATATCGCTCTTGGCATGCCAGCTGTG
TATGACACTGTCTGGTCCCCCCCCCGCTCCACGTGACGTCTGTCCACGAC
CCCACTTCCCAGGCTCCTCCGTGTCAGGTCATTCATCAGGTCCCCCTGAC
ATTAGCTAGTCACCCTATGATCCATCTACAGAGCCCACATAATCAGTCTC
TCTCAGATGCCAGCCTCACATGGCGTTTACTCTGAATACATTGATCTTCC
CTAGGTCCCTTCCTTCAATGTAGTATACTGTCTGTCTATATCGTCTTTTC
CCTATACCTTTGCAACATGTTAGTCACCATTCCCTACCGGTTTCCCTTCA
CCTTCTTTTCTTCCCTCTCCCCCTCCCGTTCTTATATTCTTCTCCGTTCT
TATTTTCGATACCN

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCAGTGCTCTGGACC
TGTAGCTGTGCCATAGTGTAGAGCCCAGCTTGGGCCTGGAGCCAAAACCA
TGCACCAAGTTCGTAAAGTGAGCAACATGCAAGACTCAGTTCCTGTACCT
GCTTGTGTTAATAGAAAAGTGCCACGGACTGCATCAAAACCAGCAGCAGT
GTATTCGCCCGCACTACCTTGTGTTTGCTTTGTATTGAAACAGTGCAGAG
CCTGCCCAGGAAGTAAAGACTCAGTGGCCCCAGGCTGCAGCGTGAGAGGC
ACTGAGGTGCTGGGGCTGGTCAGCAGTGAGTGCTGGGAGACCTGGGCATG
GGGTGGCTGGGGAAGTGAGGTGAGTCTCCCAGCGGACAGCCACCTCACTA
ACGCTTCATCTGACTACCTGCTGGGGTCAGGTTCAGCCAGGACTGCACTG
CCAGGAGGAGCTGTCTTGCTTGAGAGACCTTGTGTAACCCAGGACTGGAG
AAGTAATGTCTTCCACAGCCCACTCACTGCTCTCCTTTTCCTGACTTAGG
TCCTGTCCAGAGTGCAGTCTGATGCCCATCCAGCCCTTTGACCAGCGGGA
ATGGAATGAGCCTATGCACTCCCTCCGGATCAGTGTAGGGGGTCTTCCTG
TGCTGNCATCCATGACCAAAGCCACGGACCCTCGCTTCTGCCCCCGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_m20.b1 MSMg01no193_m20.b1 CHROMAT_FILE:
MSMg01no193_m20.b1 PHD_FILE: MSMg01no193_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:27 2005
         (329 letters)



>mm_chr11_118239669_118240397
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccattcctccaagtcagctggagatacaggtggagtaggagtggcaagcaggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcccattcctccaagtcagctggagatacaggtggagtaggggtggcaagcaggtt 264

                                                                       
Query: 65  gccagctgtcactgcacagatggagcagtgggcaaggtcttccctctttccctcacctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccagctgtcactgcacagatggagcagtgggcaaggtcttccctctttccctcacctgg 324

                                                                       
Query: 125 acagctcgaggatgctctaggatcttgggactgtgccctctggacttttccagcccccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagctcgaggatgctctaggatcttgggactgtgccctctggacttttccagcccccag 384

                                                                       
Query: 185 cctgcaccttgtcatgtttggttttacccagaccacctttggacacttccctcctcttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 cctgcaccttgtcatgtttggttttacccagaccacctttggacacttccctcttcttgt 444

                                                                       
Query: 245 cttggcgagcacgccctgaggtagtccttggcagaactggtgccatgttcctgcagttga 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 cttggcgagcacgccctgaggtagtccttggcagaactggggccatgttcctgcagttga 504

                                    
Query: 305 aaccaatgctctccctgtttcagga 329
           |||||||||||||||||||||||||
Sbjct: 505 aaccaatgctctccctgtttcagga 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no193_m20.g1 MSMg01no193_m20.g1 CHROMAT_FILE:
MSMg01no193_m20.g1 PHD_FILE: MSMg01no193_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:27 2005
         (605 letters)



>mm_chr11_118272539_118273543
          Length = 1005

 Score = 1139 bits (589), Expect = 0.0
 Identities = 601/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccagtgctctggacctgtagctgtgccatagtgtagagcccagcttgggcctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcctccagtgctctggacctgtagctgtgccatagtgtagagcccagcttgggcctggag 746

                                                                       
Query: 61  ccaaaaccatgcaccaagttcgtaaagtgagcaacatgcaagactcagttcctgtacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccaaaaccatgcaccaagttcgtaaagtgagcaacatgcaagactcagttcctgtacctg 686

                                                                       
Query: 121 cttgtgttaatagaaaagtgccacggactgcatcaaaaccagcagcagtgtattcgcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgtgttaatagaaaagtgccacggactgcatcaaaaccagcagcagtgtattcgcccg 626

                                                                       
Query: 181 cactaccttgtgtttgctttgtattgaaacagtgcagagcctgcccaggaagtaaagact 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cactaccttgagtttgctttgtattgaaacagtgcagagcctgcccaggaagtaaagact 566

                                                                       
Query: 241 cagtggccccaggctgcagcgtgagaggcactgaggtgctggggctggtcagcagtgagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 cagtggccccaggctgcagcgtgagaggcactgaggtgctggggctgggcagcagtgagt 506

                                                                       
Query: 301 gctgggagacctgggcatggggtggctggggaagtgaggtgagtctcccagcggacagcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 gctgggagacctgggcatggggtggctggggaagtgaggtgagtctcccagcgggcagcc 446

                                                                       
Query: 361 acctcactaacgcttcatctgactacctgctggggtcaggttcagccaggactgcactgc 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctcactaatgcttcatctgactacctgctggggtcaggttcagccaggactgcactgc 386

                                                                       
Query: 421 caggaggagctgtcttgcttgagagaccttgtgtaacccaggactggagaagtaatgtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggaggagctgtcttgcttgagagaccttgtgtaacccaggactggagaagtaatgtct 326

                                                                       
Query: 481 tccacagcccactcactgctctccttttcctgacttaggtcctgtccagagtgcagtctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccacagcccactcactgctctccttttcctgacttaggtcctgtccagagtgcagtctg 266

                                                                       
Query: 541 atgcccatccagccctttgaccagcgggaatggaatgagcctatgcactccctccggatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcccatccagccctttgaccagcgggaatggaatgagcctatgcactccctccggatc 206

                
Query: 601 agtgt 605
           |||||
Sbjct: 205 agtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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