Query= MSMg01no193_p04.b1 MSMg01no193_p04.b1 CHROMAT_FILE:
MSMg01no193_p04.b1 PHD_FILE: MSMg01no193_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:41 2005
(544 letters)
>mm_chr11_46453789_46454732
Length = 944
Score = 936 bits (484), Expect = 0.0
Identities = 533/566 (94%), Gaps = 26/566 (4%)
Strand = Plus / Plus
Query: 5 gaattcaaagtctcttcccggatgatagaaaggtgttctatgcttttcaagatgatggca 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagtctcttcaaggatgatagaaaggtgttctatgcttttcaagatgatggca 264
Query: 65 tgtgtgtacaactcagccaaagatctgactgcatgcttaacatgggtggatatatcattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgtacaactcagccaaagatctgactgcatgcttaacatgggtggatatatcattt 324
Query: 125 atttgattatatctgctttaatagtcagtagtactgtattccataaatgcatcatcttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgattatatctgctttaatagtcagtagtactgtattccataaatgcatcatcttat 384
Query: 185 gataatgaaaaggaaaaaaaatgactcatctctaaatctacttggtctccatgtgctcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataatgaaaaggaaaaaaaatgactcatctctaaatctacttggtctccatgtgctcat 444
Query: 245 ctgctggtcctggtctttcatcacagactctacttgtgaatgcaattcaagattttaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgctggtcctggtctttcatcacagactctacttgtgaatgcaattcaagattttaaaa 504
Query: 305 ctttataaaattctaataccatatggtattgaaaacatacgccgggcagtggtggtgcac 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttataaaattctaataccaaatggtattgaaaacatacgccgggcagtggtggtgcac 564
Query: 365 gcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgagaccagcc 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 565 gcctttaatcccagcacttgggaggcagaggcaggtggatttctgagtttgaggccagcc 624
Query: 425 tggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaa 684
Query: 485 c--------------------------aaaaaaaaacaaaacaaaaaaaaaattgatacc 518
| ||||||||| |||| ||||||||||||||||||
Sbjct: 685 ccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattgatacc 744
Query: 519 ttgcattaactttttgagtctaaaaa 544
||||||||||||||||||||||||||
Sbjct: 745 ttgcattaactttttgagtctaaaaa 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_p04.g1 MSMg01no193_p04.g1 CHROMAT_FILE:
MSMg01no193_p04.g1 PHD_FILE: MSMg01no193_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:41 2005
(383 letters)
>mm_chr11_46596946_46597729
Length = 784
Score = 688 bits (356), Expect = 0.0
Identities = 374/380 (98%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 5 ctcctgctgattcatcagccagaggaatcagctcaatcaaacccacagctgggttcaggg 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctcctgctgacccatcagccagaggaatcagctcaatcaaacccacagctgggttcaggg 525
Query: 65 cttgtgagggctgtgggcctgtcctgt-gtaggactgcccatctctgctcctgctcacct 123
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 524 cttgtgagggctgtgggcctgtcctgtggtaggactgcccatctctgttcctgctcacct 465
Query: 124 ttggaaactgtttcttccccctctgcttcctaggaaactgcagagatgagacccaggctt 183
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 464 ttggaaactgtttcttccccctctgcttcctgggaaactgcagggatgagacccaggctt 405
Query: 184 ctgctcacttctctgcatcacacaaccctctcttccccctttcagggaccctttcattcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgctcacttctctgcatcacacaaccctctcttccccctttcagggaccctttcattcc 345
Query: 244 ctgctgcacttctgaagctctgtgattcctttcttgggaagcagcctgttttttattcac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgctgcacttctgaagctctgtgattcctttcttgggaagcagcctgttttttattcac 285
Query: 304 aaacaggcagtctttggtttgccatctcccctggaagtccccccagccagcattatctat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaacaggcagtctttggtttgccatctcccctggaagtccccccagccagcattatctat 225
Query: 364 ggagtgaatccctggacagt 383
||||||||||||||||||||
Sbjct: 224 ggagtgaatccctggacagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 784
Length adjustment: 9
Effective length of query: 374
Effective length of database: 775
Effective search space: 289850
Effective search space used: 289850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
