Query= MSMg01no194_n08.b1 MSMg01no194_n08.b1 CHROMAT_FILE:
MSMg01no194_n08.b1 PHD_FILE: MSMg01no194_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:50 2005
(320 letters)
>mm_chr11_53773185_53773903
Length = 719
Score = 565 bits (292), Expect = e-165
Identities = 310/316 (98%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 5 gaattccctactataccgtgtaaacctagtttaccaggtaggtaattgagcctaacaatg 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccctactaaacagtgtaaacctagtttaccaggtaggtaattgagcctaacaatg 460
Query: 65 gttctgacttctgaccgtccagttcttctggcctctgagttgtggcctcttggccttatt 124
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 459 gttctgacttctga-tgtccagttcttctgacctctgagttgtggcctcttggccttatt 401
Query: 125 agtacttcagtcattaactaggattctctttttaaaggcttgcatagaaagggattaggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agtacttcagtcattaactaggattctctttttaaaggcttgcatagaaagggattaggt 341
Query: 185 aacaaggaagaaggaggcacaccaaggggagatgggccacgatgggcaggctccccagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aacaaggaagaaggaggcacaccaaggggagatgggccacgatgggcaggctccccagga 281
Query: 245 aagaggtgctgaaaagcattggtggctatcaatatctgccaaagagagtgagttgagcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aagaggtgctgaaaagcattggtggctatcaatatctgccaaagagagtgagttgagcag 221
Query: 305 ttcagttcaggttttg 320
| ||||||||||||||
Sbjct: 220 tccagttcaggttttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_n08.g1 MSMg01no194_n08.g1 CHROMAT_FILE:
MSMg01no194_n08.g1 PHD_FILE: MSMg01no194_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:50 2005
(290 letters)
>mm_chr11_53659236_53659925
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Plus
Query: 1 cacccatgctgtagacaggggcaggctcagggaacaatgtcctgtagctacccagcagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccatgctgtagacaggggcaggctcagggaacaatgtcctgtagctacccagcagca 260
Query: 61 ccccaggcccccaagctacttcccaacttctgctatttctctcctctctctggtcctggc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaggcccccaagctacatcccaacttctgctatttctctcctctctctggtcctggc 320
Query: 121 ctccactgctcctactcccctgttcagtccaccttggaaaagcccttggaagagtctcca 180
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 321 ctccactgctcctactcccctgttcagtccaccttgggaaagccctgggaagagtctcca 380
Query: 181 ctctcaacaactgcccattctctccggaaaaacctcaagacccatactttcatttcttgc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcaacaactgcccattctctccagaaaaacctcaagacccatactttcatttcttgc 440
Query: 241 ttattttttaaaaaattattattacagttgtgtgtgcaggttttttgttt 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttttaaaaaattattattacagttgtgtgtgcaggttttttgttt 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
